update

Manifest.toml

@@ -1,8 +1,20 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.12.6"
+julia_version = "1.12.7"
 manifest_format = "2.0"
-project_hash = "a1c572efdd97cec1f432040f02784b67635102aa"
+project_hash = "4450296e6bb4e5e245de62f43b73b263b215aa5d"
+
+[[deps.AWS]]
+deps = ["Base64", "Compat", "Dates", "Downloads", "GitHub", "HTTP", "IniFile", "JSON", "MD5", "Mocking", "OrderedCollections", "Random", "SHA", "ScopedValues", "Sockets", "URIs", "UUIDs", "XMLDict"]
+git-tree-sha1 = "842075b12a7f763c5f815a04037a99b6ac346df9"
+uuid = "fbe9abb3-538b-5e4e-ba9e-bc94f4f92ebc"
+version = "1.99.0"
+
+[[deps.AWSS3]]
+deps = ["AWS", "ArrowTypes", "Base64", "Compat", "Dates", "EzXML", "FilePathsBase", "HTTP", "MbedTLS", "Mocking", "OrderedCollections", "Retry", "SymDict", "URIs", "UUIDs", "XMLDict"]
+git-tree-sha1 = "af99cea71364c8c4483405a6b03697d197ab4d3b"
+uuid = "1c724243-ef5b-51ab-93f4-b0a88ac62a95"
+version = "0.11.6"
 
 [[deps.Accessors]]
 deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"]
@@ -74,9 +86,9 @@ version = "1.11.0"
 
 [[deps.CSV]]
 deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"]
-git-tree-sha1 = "8d8e0b0f350b8e1c91420b5e64e5de774c2f0f4d"
+git-tree-sha1 = "abed1e735dd4152f48c90cf0767e1790e25f332f"
 uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
-version = "0.10.16"
+version = "0.10.17"
 
 [[deps.CodeTracking]]
 deps = ["InteractiveUtils", "REPL", "UUIDs"]
@@ -92,14 +104,15 @@ version = "0.3.4"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9"
+git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.8"
+version = "0.7.9"
 
 [[deps.CommonSolve]]
-git-tree-sha1 = "eeaad7cef88554c2fa56b5a3f71cfd5cb708c662"
+deps = ["PrecompileTools"]
+git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7"
 uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2"
-version = "0.2.11"
+version = "0.2.14"
 
 [[deps.Compat]]
 deps = ["TOML", "UUIDs"]
@@ -119,7 +132,7 @@ version = "0.1.1"
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.3.0+1"
+version = "1.3.1+2"
 
 [[deps.CompositionsBase]]
 git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad"
@@ -146,14 +159,14 @@ version = "1.6.0"
     StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 
 [[deps.Crayons]]
-git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
+git-tree-sha1 = "54b76cbb40d9a0f5368c880725b2f141da77c94f"
 uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
-version = "4.1.1"
+version = "4.2.0"
 
 [[deps.DBInterface]]
-git-tree-sha1 = "a444404b3f94deaa43ca2a58e18153a82695282b"
+git-tree-sha1 = "265d7f87f329c063cbde41920f9d00713a43cedd"
 uuid = "a10d1c49-ce27-4219-8d33-6db1a4562965"
-version = "2.6.1"
+version = "2.7.0"
 
 [[deps.DataAPI]]
 git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
@@ -168,9 +181,9 @@ version = "1.8.2"
 
 [[deps.DataStructures]]
 deps = ["OrderedCollections"]
-git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e"
+git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.19.5"
+version = "0.19.6"
 
 [[deps.DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -208,9 +221,9 @@ version = "1.11.0"
 
 [[deps.Distributions]]
 deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "cd3c5ac74cd3923c8945c6a81518c46abd0e73a3"
+git-tree-sha1 = "a958ab3a40c755563f5e1405c0846cb0446bf19d"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.129"
+version = "0.25.131"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
@@ -240,9 +253,15 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
 version = "1.0.7"
 
 [[deps.ExprTools]]
-git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
+git-tree-sha1 = "d2e49e7efd29719d6f28b891b0e0e159daa9d2b4"
 uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
-version = "0.1.10"
+version = "0.1.11"
+
+[[deps.EzXML]]
+deps = ["Printf", "XML2_jll"]
+git-tree-sha1 = "7ea1aa5869e2626ccae84480e4f37185bc6f41d3"
+uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615"
+version = "1.2.3"
 
 [[deps.FilePathsBase]]
 deps = ["Compat", "Dates"]
@@ -261,9 +280,9 @@ version = "1.11.0"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3"
+git-tree-sha1 = "5bad39456d9f0166184fce2248783dd9862645c1"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.16.0"
+version = "1.17.0"
 weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"]
 
     [deps.FillArrays.extensions]
@@ -278,15 +297,22 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 version = "1.11.0"
 
 [[deps.Gamma]]
-git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e"
+deps = ["LogExpFunctions"]
+git-tree-sha1 = "becc397f7cfb06e343496ae6ffb04818a851da51"
 uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b"
-version = "1.1.0"
+version = "1.2.0"
 
 [[deps.GeneralUtils]]
-deps = ["CSV", "DataFrames", "DataStructures", "Dates", "Distributions", "Graphs", "HTTP", "JSON", "LibPQ", "NATS", "PrettyPrinting", "Random", "Revise", "SHA", "StringDistances", "UUIDs"]
+deps = ["AWS", "AWSS3", "CSV", "DataFrames", "DataStructures", "Dates", "Distributions", "Graphs", "HTTP", "JSON", "LibPQ", "NATS", "PrettyPrinting", "Random", "Revise", "SHA", "StringDistances", "UUIDs"]
 path = "."
 uuid = "c6c72f09-b708-4ac8-ac7c-2084d70108fe"
-version = "0.4.10"
+version = "0.6.0"
+
+[[deps.GitHub]]
+deps = ["Base64", "Dates", "HTTP", "JSON", "MbedTLS", "Sockets", "SodiumSeal", "URIs"]
+git-tree-sha1 = "33de1bc5665494f0a9669fd6027e28180709d874"
+uuid = "bc5e4493-9b4d-5f90-b8aa-2b2bcaad7a26"
+version = "5.13.0"
 
 [[deps.Graphs]]
 deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"]
@@ -303,9 +329,9 @@ version = "1.14.0"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "Dates", "EnumX", "PrecompileTools", "Random", "Reseau", "SHA", "URIs", "UUIDs", "Zlib_jll"]
-git-tree-sha1 = "c2c808326222b6dc4bec295a83b55f79aeec98e0"
+git-tree-sha1 = "d6e390d1515836237b837fb7b6fca7ba1d752db6"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "2.5.5"
+version = "2.6.5"
 
 [[deps.HashArrayMappedTries]]
 git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae"
@@ -314,9 +340,9 @@ version = "0.2.0"
 
 [[deps.HypergeometricFunctions]]
 deps = ["Gamma", "LinearAlgebra"]
-git-tree-sha1 = "18d7deab5fb0440dc6a7b6993c5c27b25420de10"
+git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e"
 uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
-version = "0.3.29"
+version = "0.3.30"
 
 [[deps.ICU_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -335,6 +361,11 @@ git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
 version = "0.1.5"
 
+[[deps.IniFile]]
+git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625"
+uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f"
+version = "0.5.1"
+
 [[deps.InlineStrings]]
 git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d"
 uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
@@ -394,9 +425,9 @@ version = "1.8.0"
 
 [[deps.JSON]]
 deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"]
-git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211"
+git-tree-sha1 = "c7345ab1a7ca4dc8a02c9f6510da0d9857bbe513"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
-version = "1.6.1"
+version = "1.7.1"
 weakdeps = ["ArrowTypes"]
 
     [deps.JSON.extensions]
@@ -414,9 +445,9 @@ weakdeps = ["ArrowTypes"]
 
 [[deps.JuliaInterpreter]]
 deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
-git-tree-sha1 = "58927c485919bf17ea308d9d82156de1adf4b006"
+git-tree-sha1 = "c3d401f110454b4ea24a76be33f6ee0d7d385103"
 uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
-version = "0.10.12"
+version = "0.11.4"
 
 [[deps.JuliaSyntaxHighlighting]]
 deps = ["StyledStrings"]
@@ -430,9 +461,9 @@ uuid = "b39eb1a6-c29a-53d7-8c32-632cd16f18da"
 version = "1.21.3+0"
 
 [[deps.LaTeXStrings]]
-git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c"
+git-tree-sha1 = "f88f3ccef05a6a72a0cf0ed417c8fd68530f4ab2"
 uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
-version = "1.4.0"
+version = "1.4.1"
 
 [[deps.LayerDicts]]
 git-tree-sha1 = "6087ad3521d6278ebe5c27ae55e7bbb15ca312cb"
@@ -480,6 +511,12 @@ version = "1.11.3+1"
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 version = "1.11.0"
 
+[[deps.Libiconv_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809"
+uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
+version = "1.18.0+0"
+
 [[deps.LinearAlgebra]]
 deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
@@ -507,9 +544,15 @@ version = "1.11.0"
 
 [[deps.LoweredCodeUtils]]
 deps = ["CodeTracking", "Compiler", "JuliaInterpreter"]
-git-tree-sha1 = "3733419e9a71156b389f3e331672d2e95436783f"
+git-tree-sha1 = "1d4c737ab26f51ceed52ab2019c09b7660eb7440"
 uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b"
-version = "3.6.2"
+version = "3.8.0"
+
+[[deps.MD5]]
+deps = ["Random", "SHA"]
+git-tree-sha1 = "1576f756617d31eb397a4a517b68562fd28dc2b4"
+uuid = "6ac74813-4b46-53a4-afec-0b5dc9d7885c"
+version = "0.2.3"
 
 [[deps.MacroTools]]
 git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522"
@@ -567,9 +610,9 @@ version = "0.1.1"
 
 [[deps.NanoDates]]
 deps = ["Dates", "Parsers"]
-git-tree-sha1 = "850a0557ae5934f6e67ac0dc5ca13d0328422d1f"
+git-tree-sha1 = "77c7e98ca39aefb481f9b97a2f4f5c5471c08a1d"
 uuid = "46f1a544-deae-4307-8689-c12aa3c955c6"
-version = "1.0.3"
+version = "1.1.0"
 
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
@@ -599,7 +642,7 @@ version = "0.8.7+0"
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.5.4+0"
+version = "3.5.6+0"
 
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
@@ -608,15 +651,15 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
 version = "0.5.6+0"
 
 [[deps.OrderedCollections]]
-git-tree-sha1 = "94ba93778373a53bfd5a0caaf7d809c445292ff4"
+git-tree-sha1 = "05f45c2e0de6259db764adbfd2f1dc6d3f8de13c"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.8.2"
+version = "2.0.1"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "26766d4b5f1a410c218a19b85a672c6edb693c65"
+git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.40"
+version = "0.11.41"
 weakdeps = ["StatsBase"]
 
     [deps.PDMats.extensions]
@@ -624,9 +667,9 @@ weakdeps = ["StatsBase"]
 
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
-git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9"
+git-tree-sha1 = "3de8f5e6e90ebfa8d6d1f86997d6cdcd6a912ff3"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.8.6"
+version = "2.8.7"
 
 [[deps.PooledArrays]]
 deps = ["DataAPI", "Future"]
@@ -647,15 +690,15 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250"
 version = "1.5.2"
 
 [[deps.PrettyPrinting]]
-git-tree-sha1 = "142ee93724a9c5d04d78df7006670a93ed1b244e"
+git-tree-sha1 = "0b7f4ad437e31c51cf5b91fb103579b04025170a"
 uuid = "54e16d92-306c-5ea0-a30b-337be88ac337"
-version = "0.4.2"
+version = "0.4.3"
 
 [[deps.PrettyTables]]
 deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "ebf455bb866ee6737030e3d3816bb6a0683c4325"
+git-tree-sha1 = "1b8aa19f229b1cea7fc93874a52e49db6a854450"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "3.4.0"
+version = "3.4.8"
 
     [deps.PrettyTables.extensions]
     PrettyTablesExcelExt = "XLSX"
@@ -716,15 +759,20 @@ version = "1.3.1"
 
 [[deps.Reseau]]
 deps = ["NetworkOptions", "OpenSSL_jll", "PrecompileTools", "Random", "SHA"]
-git-tree-sha1 = "0eab6d95ed40c2ef3992255c1c71e4f9748932b5"
+git-tree-sha1 = "aaee74fab545e9af4b21d10c2203c93c636c4ae0"
 uuid = "802f3686-a58f-41ce-bb0c-3c43c75bba36"
-version = "1.3.1"
+version = "1.4.1"
+
+[[deps.Retry]]
+git-tree-sha1 = "41ac127cd281bb33e42aba46a9d3b25cd35fc6d5"
+uuid = "20febd7b-183b-5ae2-ac4a-720e7ce64774"
+version = "0.4.1"
 
 [[deps.Revise]]
-deps = ["CRC32c", "CodeTracking", "FileWatching", "InteractiveUtils", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Preferences", "REPL", "UUIDs"]
-git-tree-sha1 = "27e3ee13fc8739a59b380d6163d6a82f52c03bd7"
+deps = ["CRC32c", "CodeTracking", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Preferences", "REPL", "UUIDs"]
+git-tree-sha1 = "f6ad10ad2fa1063c2ae0f75d17d92d1d0cae4c77"
 uuid = "295af30f-e4ad-537b-8983-00126c2a3abe"
-version = "3.15.1"
+version = "3.16.5"
 weakdeps = ["Distributed"]
 
     [deps.Revise.extensions]
@@ -738,15 +786,15 @@ version = "0.9.0"
 
 [[deps.Rmath_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
+git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
-version = "0.5.1+0"
+version = "0.5.2+0"
 
 [[deps.Roots]]
 deps = ["Accessors", "CommonSolve", "Printf"]
-git-tree-sha1 = "125cbd31a56de53169c3eed9c17180bc6c245f83"
+git-tree-sha1 = "13a9e0164267bb9ebc55c1c5d72fceea8f09555b"
 uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
-version = "3.0.4"
+version = "3.0.7"
 
     [deps.Roots.extensions]
     RootsChainRulesCoreExt = "ChainRulesCore"
@@ -811,6 +859,12 @@ git-tree-sha1 = "907703e0d50846f300650d7225bdcab145b7bca9"
 uuid = "4f5b5e99-b0ad-42cd-b47a-334e172ec8bd"
 version = "1.1.2"
 
+[[deps.SodiumSeal]]
+deps = ["Base64", "Libdl", "libsodium_jll"]
+git-tree-sha1 = "80cef67d2953e33935b41c6ab0a178b9987b1c99"
+uuid = "2133526b-2bfb-4018-ac12-889fb3908a75"
+version = "0.1.1"
+
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
 git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a"
@@ -824,9 +878,9 @@ version = "1.12.0"
 
 [[deps.SpecialFunctions]]
 deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
-git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f"
+git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "2.8.0"
+version = "2.9.0"
 
     [deps.SpecialFunctions.extensions]
     SpecialFunctionsChainRulesCoreExt = "ChainRulesCore"
@@ -836,9 +890,9 @@ version = "2.8.0"
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
-git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db"
+git-tree-sha1 = "fac51faf3bb96e8bc0bf6f9f39ca4955652776bb"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.9.18"
+version = "1.9.19"
 
     [deps.StaticArrays.extensions]
     StaticArraysChainRulesCoreExt = "ChainRulesCore"
@@ -871,15 +925,15 @@ version = "1.8.0"
 
 [[deps.StatsBase]]
 deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee"
+git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.34.12"
+version = "0.34.13"
 
 [[deps.StatsFuns]]
 deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "770240df9a3b8888065046948f7a09b4e0f997d5"
+git-tree-sha1 = "91a5737baed20ee31f3faea0e51f57461f6a689e"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "2.2.0"
+version = "2.2.1"
 
     [deps.StatsFuns.extensions]
     StatsFunsChainRulesCoreExt = "ChainRulesCore"
@@ -891,15 +945,15 @@ version = "2.2.0"
 
 [[deps.StringDistances]]
 deps = ["Distances", "StatsAPI"]
-git-tree-sha1 = "cd83a04baf746e3b43b83c61b7de77ab0409b80a"
+git-tree-sha1 = "456f343c7a6c8f52d8b501c0da2a05538ab1b907"
 uuid = "88034a9c-02f8-509d-84a9-84ec65e18404"
-version = "1.0.0"
+version = "1.0.1"
 
 [[deps.StringManipulation]]
 deps = ["PrecompileTools"]
-git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5"
+git-tree-sha1 = "773065c6e0e903924a9d838259be74338422aef2"
 uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
-version = "0.4.4"
+version = "0.5.0"
 
 [[deps.StructTypes]]
 deps = ["Dates", "UUIDs"]
@@ -909,9 +963,9 @@ version = "1.11.0"
 
 [[deps.StructUtils]]
 deps = ["Dates", "UUIDs"]
-git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8"
+git-tree-sha1 = "2d0fc55c61321ba245c47be599570d11bac50303"
 uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42"
-version = "2.8.2"
+version = "2.8.5"
 
     [deps.StructUtils.extensions]
     StructUtilsMeasurementsExt = ["Measurements"]
@@ -936,6 +990,12 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
 uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
 version = "7.8.3+2"
 
+[[deps.SymDict]]
+deps = ["Test"]
+git-tree-sha1 = "0108ccdaea3ef69d9680eeafc8d5ad198b896ec8"
+uuid = "2da68c74-98d7-5633-99d6-8493888d7b1e"
+version = "0.3.0"
+
 [[deps.TOML]]
 deps = ["Dates"]
 uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
@@ -943,9 +1003,9 @@ version = "1.0.3"
 
 [[deps.TZJData]]
 deps = ["Artifacts"]
-git-tree-sha1 = "72df96b3a595b7aab1e101eb07d2a435963a97e2"
+git-tree-sha1 = "d3b30a9f29a898e21fb4bdf280101b7a12e1f39c"
 uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7"
-version = "1.5.0+2025b"
+version = "1.5.1+2025b"
 
 [[deps.TableTraits]]
 deps = ["IteratorInterfaceExtensions"]
@@ -955,9 +1015,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "0f38a06c83f0007bbab3cf911262841c9a0f07e0"
+git-tree-sha1 = "a94d9bdda1b7bed0046cea645639ab3f62196fac"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.13.0"
+version = "1.14.0"
 
 [[deps.Test]]
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
@@ -980,9 +1040,9 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
 version = "0.11.3"
 
 [[deps.URIs]]
-git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a"
+git-tree-sha1 = "908fec9df6c5de98548ead82a468c95ccf6cd263"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.6.1"
+version = "1.7.0"
 
 [[deps.UTCDateTimes]]
 deps = ["Dates", "TimeZones"]
@@ -1010,6 +1070,18 @@ git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7"
 uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60"
 version = "1.6.1"
 
+[[deps.XML2_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
+git-tree-sha1 = "3f3315d89fc954a28f5b471bce698ed6e27481be"
+uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
+version = "2.15.3+0"
+
+[[deps.XMLDict]]
+deps = ["EzXML", "IterTools", "OrderedCollections"]
+git-tree-sha1 = "8e8cdc9c93e1f442eba471b56db6f86ffeb1a33a"
+uuid = "228000da-037f-5747-90a9-8195ccbf91a5"
+version = "0.4.2"
+
 [[deps.Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"

Project.toml

@@ -1,9 +1,11 @@
 name = "GeneralUtils"
 uuid = "c6c72f09-b708-4ac8-ac7c-2084d70108fe"
-version = "0.5.1"
+version = "0.6.1"
 authors = ["tonaerospace <tonaerospace.etc@gmail.com>"]
 
 [deps]
+AWS = "fbe9abb3-538b-5e4e-ba9e-bc94f4f92ebc"
+AWSS3 = "1c724243-ef5b-51ab-93f4-b0a88ac62a95"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
@@ -22,6 +24,8 @@ StringDistances = "88034a9c-02f8-509d-84a9-84ec65e18404"
 UUIDs = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 
 [compat]
+AWS = "1.99.0"
+AWSS3 = "0.11.6"
 Graphs = "1.14.0"
 HTTP = "2.5.0 - 2.9.9"
 JSON = "1.3.0 - 1.9.9"

src/GeneralUtils.jl

@@ -21,6 +21,8 @@ using .llmUtil
 include("interface.jl")
 using .interface
 
+include("garageS3.jl")
+using .garageS3
 
 #------------------------------------------------------------------------------------------------100
 

src/dbUtil.jl

@@ -1,13 +1,107 @@
 module dbUtil
   
-export dictToPostgresKeyValueString, generateInsertSQL, generateUpdateSQL
+export dictToPostgresKeyValueString, generateInsertSQL, generateUpdateSQL, find_text_vector_similarity,
+        execute_postgres_sql
 
 using JSON, DataStructures, Distributions, Random, Dates, UUIDs, DataFrames,
-      SHA
+      SHA, NATS, LibPQ
 using ..util
 #[PENDING] update code to use JSON
 # ---------------------------------------------- 100 --------------------------------------------- #
 
+""" Execute SQL against a PostgreSQL database using LibPQ connection string.
+
+# Arguments
+- `pg_conn_str::AbstractString`: PostgreSQL connection string in format "host=... port=... dbname=... user=... password=..."
+- `sql::AbstractString`: SQL query to execute
+
+# Returns
+- `LibPQ.Result` on success, `nothing` on failure
+
+# Example
+```julia
+pg_conn_str = "host=localhost port=5432 dbname=mydb user=myuser password=mypass"
+sql = "SELECT * FROM wine;"
+result = execute_postgres_sql(pg_conn_str, sql)
+```
+"""
+function execute_postgres_sql(pg_conn_str::T, sql::T) where {T<:AbstractString}
+  db_connection = LibPQ.Connection(pg_conn_str)
+  result = nothing
+  try
+    result = LibPQ.execute(db_connection, sql)  
+  catch e
+    @error e
+    LibPQ.close(db_connection)
+  end
+  
+  LibPQ.close(db_connection)
+  return result
+end
+
+
+""" find_text_vector_similarity
+
+Find the most similar text records in a PostgreSQL database using vector embeddings and cosine similarity.
+
+This function computes an embedding for the input text using the provided embedding function,
+then queries the database to find records with the most similar vector representations using
+PostgreSQL's cosine similarity operator (`<->`).
+
+# Arguments
+- `text::AbstractString`: The input text to find similar records for
+- `tablename::AbstractString`: Name of the database table containing the embedding column
+- `embeddingColumnName::AbstractString`: Name of the column storing vector embeddings
+- `executesql::Function`: Function that executes SQL queries and returns results
+- `get_embedding::Function`: Function that generates embeddings for text inputs
+
+# Keyword Arguments
+- `limit::Integer=1`: Maximum number of similar records to return
+
+# Returns
+- `DataFrame`: Database records ordered by similarity (most similar first), including a `distance` column
+  where smaller values indicate higher similarity
+
+# Example
+```julia
+# Assume you have embedding and SQL execution functions
+text = "a rich structured red wine"
+tablename = "wine"
+embeddingColumnName = "description_embedding"
+
+df = find_text_vector_similarity(
+    text, tablename, embeddingColumnName,
+    executesql, get_embedding;
+    limit = 5
+)
+
+# Result contains columns from the table plus a 'distance' column
+# where distance = 1 - cosine_similarity (smaller = more similar)
+```
+"""
+function find_text_vector_similarity(text::T1, tablename::T2, embeddingColumnName::T3,
+  executesql::Function, get_embedding; 
+  limit::Integer=1
+  )::DataFrame where {T1<:AbstractString, T2<:AbstractString, T3<:AbstractString}
+  # get embedding from LLM service
+  _embedding = get_embedding([text])
+  _embedding = _embedding["data"][1]["embedding"]
+  _embedding = "$_embedding"
+
+  embedding = _embedding[4:end] # remove 'Any' from Any[...]
+
+  # check whether there is close enough vector already store in executesql. if no, add, else skip 
+  sql = """
+        SELECT *, $embeddingColumnName <-> '$embedding' as distance
+        FROM $tablename
+        ORDER BY distance LIMIT $limit;
+        """
+  response = executesql(sql)
+  df = DataFrame(response)
+
+  return df
+end
+
 
 """
 dictToPostgresKeyValueString - Convert dictionary to PostgreSQL key-value string format

src/garageS3.jl

@@ -0,0 +1,254 @@
+module garageS3
+
+export
+    GarageStorage,
+    put_file,
+    get_file,
+    list_files,
+    delete_file
+
+using AWS, AWSS3
+# ---------------------------------------------- 100 --------------------------------------------- #
+
+# Garage uses Path-Style routing (https://s3-api.my-domain.com/bucket/key).
+# this file use local AWS config
+
+""" Example
+const storage = GarageStorage(
+    "https://s3-api.yiem.cc",
+    "GKb080154a2e5b19100b1b2c6e",     # key ID  (create at garage-ui.yiem.cc)
+    "a2c6b1379c2f731d3e6e5a408dd4d6cffca7511717675f55114ff94828febca1",   # key ID's secret key
+    "sommpanion-s3"
+)
+
+# Safe to run inside concurrent HTTP handlers (e.g., Oxygen.jl, HTTP.jl)
+put_file(storage, "users-1005.json", "{\"status\": \"active\"}")
+keys = list_files(storage)
+data = String(get_file(storage, "users-1004.json"))
+
+println("Read back: ", data)
+println("Bucket keys: ", keys)
+
+# test with curl
+curl -v \
+  -H 'Host: sommpanion-s3.s3-web.yiem.cc' \
+  http://192.168.88.106:3902/users-1002.json
+
+
+# test with a browser
+https://s3-web.mydomain.com/my_bucket_name/users-1002.json
+
+"""
+
+# ===================================================================
+# 1. Custom GarageConfig Definition (Thread-Safe, No Global State)
+# ===================================================================
+
+struct SimpleCredentials
+    access_key_id::String
+    secret_key::String
+    token::String
+end
+
+struct GarageConfig <: AWS.AbstractAWSConfig
+    endpoint::String
+    region::String
+    credentials::SimpleCredentials
+end
+
+# Required extensions for AWS.jl pipeline
+AWS.refresh!(c::SimpleCredentials; force::Bool=false) = c
+AWS.credentials(c::SimpleCredentials) = c
+AWS.check_credentials(c::SimpleCredentials) = c
+AWS.region(aws::GarageConfig) = aws.region
+AWS.credentials(aws::GarageConfig) = aws.credentials
+
+""" Generate the base URL for a Garage S3 service request.
+
+# Arguments
+- `aws::GarageConfig`
+  The Garage configuration containing the endpoint.
+- `service::String`
+  The AWS service name (e.g., `"s3"`).
+- `region::String`
+  The AWS region string.
+
+# Return
+- `String`: The stripped endpoint URL (trailing slashes removed).
+"""
+function AWS.generate_service_url(aws::GarageConfig, service::String, region::String)
+    return strip(aws.endpoint, '/')
+end
+
+""" Generate the full service URL including the resource path for a Garage S3 request.
+
+# Arguments
+- `aws::GarageConfig`
+  The Garage configuration containing the endpoint.
+- `service::String`
+  The AWS service name (e.g., `"s3"`).
+- `resource::String`
+  The S3 resource path (e.g., `"/bucket/key"`).
+
+# Return
+- `String`: The full URL combining the endpoint and resource path.
+"""
+function AWS.generate_service_url(aws::GarageConfig, service::String, resource::String)
+    endpoint = strip(aws.endpoint, '/')
+    resource_path = startswith(resource, '/') ? resource : "/" * resource
+    return string(endpoint, resource_path)
+end
+
+# ===================================================================
+# 2. Thread-Safe Storage Client Wrapper
+# ===================================================================
+
+struct GarageStorage
+    config::GarageConfig
+    bucket::String
+end
+""" Create a thread-safe Garage S3 storage client.
+
+# Arguments
+- `endpoint::String`
+  The Garage S3 API endpoint URL (e.g., `"https://s3-api.yiem.cc"`).
+- `key::String`
+  The Garage access key ID (created via garage-ui).
+- `secret::String`
+  The secret key corresponding to the access key.
+- `bucket::String`
+  The name of the S3 bucket to use.
+
+# Keyword Arguments
+- `region::String = "garage"`
+  The region identifier for the Garage instance.
+
+# Return
+- `GarageStorage`: A thread-safe storage client instance.
+
+# Examples
+```jldoctest
+julia> storage = GarageStorage("https://s3-api.yiem.cc", "GKb080154a2e5b19100b1b2c6e", "a2c6b1379c2f731d3e6e5a408dd4d6cffca7511717675f55114ff94828febca1", "sommpanion-s3")
+GarageStorage(GarageConfig(...), "sommpanion-s3")
+```
+"""
+function GarageStorage(endpoint::String, key::String, secret::String, bucket::String; region::String="garage")
+    creds = SimpleCredentials(key, secret, "")
+    config = GarageConfig(endpoint, region, creds)
+    return GarageStorage(config, bucket)
+end
+
+""" Upload an object to the Garage S3 bucket.
+
+# Arguments
+- `storage::GarageStorage`
+  The storage client instance.
+- `key::String`
+  The object key (name) in the bucket. Must not contain slashes (`/`).
+- `data::Union{String, Vector{UInt8}}`
+  The data to upload.
+
+# Return
+- `Nothing` if the key contains slashes (upload aborted with warning).
+- Prints a success message if the upload completes.
+
+# Notes
+- Slashes in keys are prohibited to prevent S3 listing issues. Use a flat naming
+  convention (e.g., `"users-1002.json"` instead of `"users/1002.json"`).
+
+# Examples
+```julia
+julia> put_file(storage, "test.json", "{\"status\": \"active\"}")
+Successfully uploaded:  test.json
+```
+"""
+function put_file(storage::GarageStorage, key::String, data::Union{String, Vector{UInt8}})
+    # Check if the key contains a slash (virtual folder character)
+    if occursin('/', key)
+        @warn "Upload aborted! Slashes ('/') are not allowed in keys ('$key') to prevent S3 listing issues. Use a flat naming convention instead (e.g., 'users-1002.json')."
+        return nothing
+    end
+    
+    # Proceed if the key is flat
+    s3_put(storage.config, storage.bucket, key, data)
+    println("Successfully uploaded: ", key)
+end
+
+""" Download an object from the Garage S3 bucket.
+
+# Arguments
+- `storage::GarageStorage`
+  The storage client instance.
+- `key::String`
+  The object key (name) in the bucket.
+
+# Return
+- `Vector{UInt8}`: The raw bytes of the downloaded object.
+
+# Examples
+```julia
+julia> data = String(get_file(storage, "test.json"))
+"\"{\\\"status\\\": \\\"active\\\"}\""
+```
+"""
+function get_file(storage::GarageStorage, key::String)::Vector{UInt8}
+    return s3_get(storage.config, storage.bucket, key)
+end
+
+""" List all object keys in the Garage S3 bucket.
+
+# Arguments
+- `storage::GarageStorage`
+  The storage client instance.
+
+# Return
+- `Vector{String}`: A list of object keys (file names) in the bucket.
+
+# Examples
+```julia
+julia> keys = list_files(storage)
+3-element Vector{String}:
+ "test1.json"
+ "test2.json"
+ "users-1002.json"
+```
+"""
+function list_files(storage::GarageStorage)
+    # Approach 2: s3_list_objects returns a Vector of Dicts with object details
+    objects = s3_list_objects(storage.config, storage.bucket)
+    return [obj["Key"] for obj in objects]
+end
+
+""" Delete an object from the Garage S3 bucket.
+
+# Arguments
+- `storage::GarageStorage`
+  The storage client instance.
+- `key::String`
+  The object key (name) to delete.
+
+# Examples
+```julia
+julia> delete_file(storage, "test.json")
+```
+"""
+function delete_file(storage::GarageStorage, key::String)
+    s3_delete(storage.config, storage.bucket, key)
+end
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+end # module GarageS3