diff --git a/previousVersion/0.0.8/userFolder/.gitignore b/previousVersion/0.0.8/userFolder/.gitignore deleted file mode 100644 index 624779e..0000000 --- a/previousVersion/0.0.8/userFolder/.gitignore +++ /dev/null @@ -1 +0,0 @@ -.CondaPkg \ No newline at end of file diff --git a/previousVersion/0.0.8/userFolder/main_gpu_0.jl b/previousVersion/0.0.8/userFolder/main_gpu_0.jl deleted file mode 100644 index dd900c4..0000000 --- a/previousVersion/0.0.8/userFolder/main_gpu_0.jl +++ /dev/null @@ -1,846 +0,0 @@ -# ---------------------------------------------------------------------------- # -# if one need to reinstall all python packages # -# ---------------------------------------------------------------------------- # - # 1. delete .CondaPkg folder in working folder - # 2. delete CondaPkg.toml file in working folder -# using Pkg; Pkg.activate("."); -# pythonPkg = ["CondaPkg", "PythonCall"] -# for i in pythonPkg try Pkg.rm(i) catch end end -# for i in pythonPkg Pkg.add(i) end -# using CondaPkg, PythonCall -# channels = ["anaconda", "conda-forge", "pytorch"] -# for i in channels CondaPkg.add_channel(i) end -# condapackage = ["numpy", "pytorch", "snntorch"] -# for i in condapackage CondaPkg.add(i) end - -using Pkg; Pkg.activate("."); Pkg.resolve(), Pkg.instantiate() -using Revise -using BenchmarkTools, Cthulhu -using Flux, CUDA -using BSON, JSON3 -using MLDatasets: MNIST -using MLUtils, ProgressMeter, Dates, Random, - Serialization, OneHotArrays , GLMakie - -using CondaPkg, PythonCall -np = pyimport("numpy") -torch = pyimport("torch") -spikegen = pyimport("snntorch.spikegen") # https://github.com/jeshraghian/snntorch - -using IronpenGPU -using GeneralUtils - -sep = Sys.iswindows() ? "\\" : "/" -rootDir = pwd() - -# select compute device -# device = Flux.CUDA.functional() ? gpu : cpu # Flux provide "cpu" and "gpu" keywork -device = gpu -if device == gpu CUDA.device!(0) end #CHANGE -# CUDA.allowscalar(false) # turn off scalar indexing in CPU to make it easier when moving to GPU -#------------------------------------------------------------------------------------------------100 - - - -""" - Todo: - - [] - - Change from version: - - - - All features - - -""" - - -# communication config --------------------------------------------------------------------------100 - -database_ip = "localhost" -# database_ip = "192.168.0.8" - -#------------------------------------------------------------------------------------------------100 -modelname = "runOn_gpu_0" #CHANGE -imageBatch = 1 - - -function generate_snn(filename::String, location::String) - signalInput_portnumbers = (10, 20, imageBatch) # 2nd dim needs to match - # input signal + copied input signal + noise. - # 3rd dim is input batch size - noise_portnumbers = (signalInput_portnumbers[1], 1) - output_portnumbers = (10, 1) - - # 5000 neurons are maximum for 64GB memory i.e. 300 LIF : 200 ALIF - lif_neuron_number = (signalInput_portnumbers[1], 30) # CHANGE - alif_neuron_number = (signalInput_portnumbers[1], 20) # CHANGE from Allen Institute, ALIF is 20-40% of LIF - - # totalNeurons = computeNeuronNumber + noise_portnumbers + signalInput_portnumbers - # totalInputPort = noise_portnumbers + signalInput_portnumbers - - # kfn and neuron config - passthrough_neuron_params = Dict( - :type => "passthroughNeuron" - ) - - lif_neuron_params = Dict{Symbol, Any}( - :type => "lifNeuron", - :v_t_default => 0.0, - :v_th => 1.0, # neuron firing threshold (this value is treated as maximum bound if I use auto generate) - :tau_m => 50.0, # membrane time constant in millisecond. - :eta => 1e-6, - # Good starting value is 1/10th of tau_a - # This is problem specific parameter. It controls how leaky the neuron is. - # Too high(less leaky) makes learning algo harder to move model into direction that reduce error - # resulting in model's error to explode exponantially likely because learning algo will try to - # exert more force (larger w_out_change) to move neuron into direction that reduce error - # For example, model error from 7 to 2e6. - - :synapticConnectionPercent => 20, # % coverage of total neurons in kfn - ) - - alif_neuron_params = Dict{Symbol, Any}( - :type => "alifNeuron", - :v_t_default => 0.0, - :v_th => 1.0, # neuron firing threshold (this value is treated as maximum bound if I use auto generate) - :tau_m => 50.0, # membrane time constant in millisecond. - :eta => 1e-6, - # Good starting value is 1/10th of tau_a - # This is problem specific parameter. It controls how leaky the neuron is. - # Too high(less leaky) makes learning algo harder to move model into direction that reduce error - # resulting in model's error to explode exponantially likely because learning algo will try to - # exert more force (larger w_out_change) to move neuron into direction that reduce error - # For example, model error from 7 to 2e6. - - :tau_a => 800.0, # adaptation time constant in millisecond. it defines neuron memory length. - # This is problem specific parameter - # Good starting value is 0.5 to 2 times of info STORE-RECALL length i.e. total time SNN takes to - # perform a task, for example, equals to episode length. - # From "Spike frequency adaptation supports network computations on temporally dispersed - # information" - - :synapticConnectionPercent => 20, # % coverage of total neurons in kfn - ) - - linear_neuron_params = Dict{Symbol, Any}( - :type => "linearNeuron", - :v_th => 1.0, # neuron firing threshold (this value is treated as maximum bound if I use auto generate) - :tau_out => 100.0, # output time constant in millisecond. - :synapticConnectionPercent => 20, # % coverage of total neurons in kfn - # Good starting value is 1/50th of tau_a - # This is problem specific parameter. - # It controls how leaky the neuron is. - # Too high(less leaky) makes learning algo harder to move model into direction that reduce error - # resulting in model's error to explode exponantially. For example, model error from 7 to 2e6 - # One can image training output neuron is like Tetris Game. - ) - - integrate_neuron_params = Dict{Symbol, Any}( - :type => "integrateNeuron", - :synapticConnectionPercent => 100, # % coverage of total neurons in kfn - :eta => 1e-6, - :tau_out => 100.0, - # Good starting value is 1/50th of tau_a - # This is problem specific parameter. - # It controls how leaky the neuron is. - # Too high(less leaky) makes learning algo harder to move model into direction that reduce error - # resulting in model's error to explode exponantially. For example, model error from 7 to 2e6 - # One can image training output neuron is like Tetris Game. - ) - - I_kfnparams = Dict{Symbol, Any}( - :knowledgeFnName=> "I", - :neuronFiringRateTarget=> 20.0, # Hz - - # group relavent info - :inputPort=> Dict( - :noise=> Dict( - :numbers=> noise_portnumbers, - :params=> passthrough_neuron_params, - ), - :signal=> Dict( - :numbers=> signalInput_portnumbers, # in case of GloVe word encoding, it is 300 - :params=> passthrough_neuron_params, - ), - ), - :outputPort=> Dict( - :numbers=> output_portnumbers, # output neuron, this is also the output length - :params=> linear_neuron_params, - ), - :computeNeuron=> Dict( - :lif=> Dict( - :numbers=> lif_neuron_number, # number in (row, col) tuple format - :params=> lif_neuron_params, - ), - :alif=> Dict( - :numbers=> alif_neuron_number, # number in (row, col) tuple format - :params=> alif_neuron_params, - ), - ), - ) - - #------------------------------------------------------------------------------------------------100 - - model = IronpenGPU.kfn_1(I_kfnparams, device=device); - - - # serialize(location * sep * filename, model) - println("SNN generated") - - return model -end - -function data_loader() - # test problem - trainDataset = MNIST(:train)[1:3] # total 60000 - # validateDataset = MNIST(:test) - validateDataset = MNIST(:train)[1:3] - labelDict = [0:9...] - - trainData = MLUtils.DataLoader( - trainDataset; # fullTrainDataset or trainDataset - batchsize=imageBatch, - collate=true, - shuffle=true, - buffer=true, - partial=false, # better for gpu memory if batchsize is fixed - # parallel=true, #BUG ?? causing dataloader into forever loop - ) - - validateData = MLUtils.DataLoader( - validateDataset; - batchsize=imageBatch, - collate=true, - shuffle=true, - buffer=true, - partial=false, # better for gpu memory if batchsize is fixed - # parallel=true, #BUG ?? causing dataloader into forever loop - ) - - # dummy data used to debug - # trainData = [(rand(10, 10), [5]), (rand(10, 10), [2])] - # trainData = [(rand(10, 10), [5]),] - - return trainData, validateData, labelDict -end - -function train_snn(model, trainData, validateData, labelDict::Vector) - - # random seed - # rng = MersenneTwister(1234) - - logitLog = zeros(10, 2) - firedNeurons_t1 = zeros(1) - var1 = zeros(10, 2) - var2 = zeros(10, 2) - var3 = zeros(10, 2) - var4 = zeros(10, 2) - - # ----------------------------------- plot ----------------------------------- # - plot10 = Observable(firedNeurons_t1) - - plot20 = Observable(logitLog[1 , :]) - plot21 = Observable(logitLog[2 , :]) - plot22 = Observable(logitLog[3 , :]) - plot23 = Observable(logitLog[4 , :]) - plot24 = Observable(logitLog[5 , :]) - plot25 = Observable(logitLog[6 , :]) - plot26 = Observable(logitLog[7 , :]) - plot27 = Observable(logitLog[8 , :]) - plot28 = Observable(logitLog[9 , :]) - plot29 = Observable(logitLog[10, :]) - - plot30 = Observable(var1[1 , :]) - plot31 = Observable(var1[2 , :]) - plot32 = Observable(var1[3 , :]) - plot33 = Observable(var1[4 , :]) - plot34 = Observable(var1[5 , :]) - plot35 = Observable(var1[6 , :]) - plot36 = Observable(var1[7 , :]) - plot37 = Observable(var1[8 , :]) - plot38 = Observable(var1[9 , :]) - plot39 = Observable(var1[10, :]) - - plot40 = Observable(var2[1 , :]) - plot41 = Observable(var2[2 , :]) - plot42 = Observable(var2[3 , :]) - plot43 = Observable(var2[4 , :]) - plot44 = Observable(var2[5 , :]) - plot45 = Observable(var2[6 , :]) - plot46 = Observable(var2[7 , :]) - plot47 = Observable(var2[8 , :]) - plot48 = Observable(var2[9 , :]) - plot49 = Observable(var2[10, :]) - - plot50 = Observable(var3[1 , :]) - plot51 = Observable(var3[2 , :]) - plot52 = Observable(var3[3 , :]) - plot53 = Observable(var3[4 , :]) - plot54 = Observable(var3[5 , :]) - plot55 = Observable(var3[6 , :]) - plot56 = Observable(var3[7 , :]) - plot57 = Observable(var3[8 , :]) - plot58 = Observable(var3[9 , :]) - plot59 = Observable(var3[10, :]) - - plot60 = Observable(var4[1 , :]) - plot61 = Observable(var4[2 , :]) - plot62 = Observable(var4[3 , :]) - plot63 = Observable(var4[4 , :]) - plot64 = Observable(var4[5 , :]) - plot65 = Observable(var4[6 , :]) - plot66 = Observable(var4[7 , :]) - plot67 = Observable(var4[8 , :]) - plot68 = Observable(var4[9 , :]) - plot69 = Observable(var4[10, :]) - - # main figure - fig1 = Figure() - - subfig1 = GLMakie.Axis(fig1[1, 1], # define position of this subfigure inside a figure - title = "RSNN firedNeurons_t1", - xlabel = "time", - ylabel = "data" - ) - lines!(subfig1, plot10, label = "firedNeurons_t1") - # axislegend(subfig1, position = :lb) - - subfig2 = GLMakie.Axis(fig1[2, 1], # define position of this subfigure inside a figure - title = "output neurons logit", - xlabel = "time", - ylabel = "data" - ) - - lines!(subfig2, plot20, label = "0", color = 1, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot21, label = "1", color = 2, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot22, label = "2", color = 3, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot23, label = "3", color = 4, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot24, label = "4", color = 5, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot25, label = "5", color = 6, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot26, label = "6", color = 7, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot27, label = "7", color = 8, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot28, label = "8", color = 9, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig2, plot29, label = "9", color = 10, colormap = :tab10, colorrange = (1, 10)) - # axislegend(subfig2, position = :lb) - - - subfig3 = GLMakie.Axis(fig1[3, 1], # define position of this subfigure inside a figure - title = "last RSNN wRec", - xlabel = "time", - ylabel = "data" - ) - lines!(subfig3, plot30, label = "0", color = 1, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot31, label = "1", color = 2, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot32, label = "2", color = 3, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot33, label = "3", color = 4, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot34, label = "4", color = 5, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot35, label = "5", color = 6, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot36, label = "6", color = 7, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot37, label = "7", color = 8, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot38, label = "8", color = 9, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig3, plot39, label = "9", color = 10, colormap = :tab10, colorrange = (1, 10)) - # axislegend(subfig3, position = :lb) - - subfig4 = GLMakie.Axis(fig1[4, 1], # define position of this subfigure inside a figure - title = "RSNN v_t1", - xlabel = "time", - ylabel = "data" - ) - lines!(subfig4, plot40, label = "0", color = 1, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot41, label = "1", color = 2, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot42, label = "2", color = 3, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot43, label = "3", color = 4, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot44, label = "4", color = 5, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot45, label = "5", color = 6, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot46, label = "6", color = 7, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot47, label = "7", color = 8, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot48, label = "8", color = 9, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig4, plot49, label = "9", color = 10, colormap = :tab10, colorrange = (1, 10)) - # axislegend(subfig4, position = :lb) - - subfig5 = GLMakie.Axis(fig1[5, 1], # define position of this subfigure inside a figure - title = "output neuron epsilonRec", - xlabel = "time", - ylabel = "data" - ) - lines!(subfig5, plot50, label = "0", color = 1, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot51, label = "1", color = 2, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot52, label = "2", color = 3, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot53, label = "3", color = 4, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot54, label = "4", color = 5, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot55, label = "5", color = 6, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot56, label = "6", color = 7, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot57, label = "7", color = 8, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot58, label = "8", color = 9, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig5, plot59, label = "9", color = 10, colormap = :tab10, colorrange = (1, 10)) - # axislegend(subfig5, position = :lb) - - subfig6 = GLMakie.Axis(fig1[6, 1], # define position of this subfigure inside a figure - title = "output neuron wRecChange", - xlabel = "time", - ylabel = "data" - ) - lines!(subfig6, plot60, label = "0", color = 1, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot61, label = "1", color = 2, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot62, label = "2", color = 3, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot63, label = "3", color = 4, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot64, label = "4", color = 5, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot65, label = "5", color = 6, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot66, label = "6", color = 7, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot67, label = "7", color = 8, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot68, label = "8", color = 9, colormap = :tab10, colorrange = (1, 10) ) - lines!(subfig6, plot69, label = "9", color = 10, colormap = :tab10, colorrange = (1, 10)) - # axislegend(subfig6, position = :lb) - - # wait(display(fig1)) - # display(fig1) - # --------------------------------- end plot --------------------------------- # - - # model learning - thinkingPeriod = 16 # 1000-784 = 216 - bestAccuracy = 0.0 - finalAnswer = [0] |> device # store model prediction in (logit of choices, batch) - stop = 0 - for epoch = 1:1000 - stop == 3 ? break : false - println("epoch $epoch") - n = length(trainData) - println("n $n") - p = Progress(n, dt=1.0) # minimum update interval: 1 second - for (imgBatch, labels) in trainData # imgBatch (28, 28, 4) i.e. (row, col, batch) - for rep in 1:1000 - stop == 3 ? break : false - # signal (10, 2, 784, 4) i.e. (row, col, timestep, batch) - signal = spikeGenerator(imgBatch, [0.05, 0.1, 0.2, 0.3, 0.5], noise=(true, 1, 0.1), copies=18) - if length(size(signal)) == 3 - row, col, sequence = size(signal) - batch = 1 - else - row, col, sequence, batch = size(signal) - end - - # encode labels - correctAnswer = onehotbatch(labels, labelDict) # (choices, batch) - - # insert data into model sequencially - for timestep in 1:(sequence + thinkingPeriod) # sMNIST has 784 timestep(pixel) + thinking period = 1000 timestep - if timestep <= sequence - current_pixel = view(signal, :, :, timestep, :) |> device - else - current_pixel = zeros(row, col, batch) |> device # dummy input in "thinking" period - end - - if timestep == 1 # tell a model to start learning. 1-time only - model.learningStage = [1] - finalAnswer = [0] |> device - elseif timestep == (sequence+thinkingPeriod) - model.learningStage = [3] - else - end - - # predict - logit, _firedNeurons_t1 = model(current_pixel) - - # # log answer of all timestep - # logitLog = [logitLog;; logit] - # firedNeurons_t1 = push!(firedNeurons_t1, _firedNeurons_t1) - # var1 = [var1;; _var1] - # var2 = [var2;; _var2] - # var3 = [var3;; _var3] - # var4 = [var4;; _var4] - - if timestep < sequence # online learning, 1-by-1 timestep - # no error calculation - elseif timestep == sequence # online learning, 1-by-1 timestep - # no error calculation - elseif timestep > sequence && timestep < sequence+thinkingPeriod # collect answer - finalAnswer = length(finalAnswer) == 1 ? logit : finalAnswer .+ logit # (logit, batch) - predict_cpu = logit |> cpu - - modelError = (predict_cpu .- correctAnswer) - modelError = reshape(modelError, (1,1,:, size(modelError, 2))) - modelError = sum(modelError, dims=3) |> device - outputError = (predict_cpu .- correctAnswer) |> device - - lif_epsilonRec_cpu = model.lif_epsilonRec |> cpu - on_zt_cpu = model.on_zt |> cpu - - IronpenGPU.compute_paramsChange!(model, modelError, outputError) - - lif_wRecChange_cpu = model.lif_wRecChange |> cpu - - # if sum(lif_wRecChange_cpu) != 0 - # println("") - # lif_vt_cpu = model.lif_vt |> cpu - # lif_zt_cpu = model.lif_zt |> cpu - - # lif_recSignal = model.lif_recSignal |> cpu - - # on_vt_cpu = model.on_vt |> cpu - # on_vt_cpu = on_vt_cpu[1,1,:,1] - - # on_zt_cpu = on_zt_cpu[1,1,:,1] - # on_wOutChange_cpu = model.on_wOutChange |> cpu - # on_wOutChange_cpu = sum(on_wOutChange_cpu, dims=(1,2)) - # println("lif vt $(lif_vt_cpu[1,1,5,1]) lif zt $(lif_zt_cpu[1,1,5,1]) on_vt $on_vt_cpu on_zt $on_zt_cpu on_wOutChange_cpu $on_wOutChange_cpu") - # println("lif_recSignal ", lif_recSignal) - # println("") - # println("lif_epsilonRec_cpu ", lif_epsilonRec_cpu) - # println("") - # println("lif_wRecChange ", lif_wRecChange_cpu) - # println("") - # zit_cumulative = model.zit_cumulative |> cpu - # println("zit_cumulative ", zit_cumulative) - - # # error("DEBUG -> main $(Dates.now())") - # end - - elseif timestep == sequence+thinkingPeriod - finalAnswer = length(finalAnswer) == 1 ? logit : finalAnswer .+ logit # (logit, batch) - predict_cpu = logit |> cpu - - modelError = (predict_cpu .- correctAnswer) - modelError = reshape(modelError, (1,1,:, size(modelError, 2))) - modelError = sum(modelError, dims=3) |> device - outputError = (predict_cpu .- correctAnswer) |> device - - lif_epsilonRec_cpu = model.lif_epsilonRec |> cpu - on_zt_cpu = model.on_zt |> cpu - - IronpenGPU.compute_paramsChange!(model, modelError, outputError) - - lif_wRecChange_cpu = model.lif_wRecChange |> cpu - - - println("") - lif_recSignal_cpu = model.lif_recSignal |> cpu - lif_recSignal_cpu = sum(lif_recSignal_cpu[:,:,5,1]) - lif_vt_cpu = model.lif_vt |> cpu - lif_vt_cpu = lif_vt_cpu[1,1,5,1] - lif_zt_cpu = model.lif_zt |> cpu - lif_zt_cpu = lif_zt_cpu[1,1,5,1] - lif_epsilonRec_cpu = model.lif_epsilonRec |> cpu - lif_epsilonRec_cpu = sum(lif_epsilonRec_cpu[:,:,5,1]) - lif_wRecChange_cpu = sum(lif_wRecChange_cpu[:,:,5,1]) - on_vt_cpu = model.on_vt |> cpu - on_vt_cpu = on_vt_cpu[1,1,:,1] - - on_zt_cpu = on_zt_cpu[1,1,:,1] - on_wOutChange_cpu = model.on_wOutChange |> cpu - on_wOutChange_cpu = sum(on_wOutChange_cpu, dims=(1,2)) - println("lif recSignal $lif_recSignal_cpu lif vt $lif_vt_cpu lif zt $lif_zt_cpu lif_epsilonRec_cpu $lif_epsilonRec_cpu lif_wRecChange_cpu $lif_wRecChange_cpu on_vt $on_vt_cpu on_zt $on_zt_cpu on_wOutChange_cpu $on_wOutChange_cpu") - # println("lif_recSignal ", lif_recSignal) - # println("") - # println("lif_epsilonRec_cpu ", lif_epsilonRec_cpu) - # println("") - # println("lif_wRecChange ", lif_wRecChange_cpu) - # println("") - # zit_cumulative = model.zit_cumulative |> cpu - # println("zit_cumulative ", zit_cumulative) - - # error("DEBUG -> main $(Dates.now())") - - # commit learned weight only if the model answer incorrectly - finalAnswer_cpu = finalAnswer |> cpu - # println("label $(labels[1]) finalAnswer $finalAnswer_cpu") - max = isequal.(finalAnswer_cpu[:,1], maximum(finalAnswer_cpu[:,1])) - if sum(finalAnswer_cpu) == 0 - println("modelname $modelname epoch $epoch label $(labels[1]) finalAnswer ZERO answer LEARNING") - IronpenGPU.learn!(model, device) - elseif sum(max) == 1 && findall(max)[1] -1 == labels[1] - finalAnswer_cpu = findall(max)[1] - 1 - println("modelname $modelname epoch $epoch label $(labels[1]) finalAnswer $finalAnswer_cpu CORRECT") - elseif sum(max) == 1 && findall(max)[1] -1 != labels[1] - finalAnswer = findall(max)[1] - 1 - println("modelname $modelname epoch $epoch label $(labels[1]) finalAnswer $finalAnswer_cpu LEARNING") - IronpenGPU.learn!(model, device) - else - println("modelname $modelname epoch $epoch label $(labels[1]) finalAnswer $finalAnswer_cpu LEARNING") - IronpenGPU.learn!(model, device) - end - - # error("DEBUG -> main $(Dates.now())") - else - error("undefined condition line $(@__LINE__)") - # error("DEBUG -> main $(Dates.now())") - end - - # update plot - # plot10[] = firedNeurons_t1 - - # plot20[] = view(logitLog, 1 , :) - # plot21[] = view(logitLog, 2 , :) - # plot22[] = view(logitLog, 3 , :) - # plot23[] = view(logitLog, 4 , :) - # plot24[] = view(logitLog, 5 , :) - # plot25[] = view(logitLog, 6 , :) - # plot26[] = view(logitLog, 7 , :) - # plot27[] = view(logitLog, 8 , :) - # plot28[] = view(logitLog, 9 , :) - # plot29[] = view(logitLog, 10, :) - - # plot30[] = view(var1, 1 , :) - # plot31[] = view(var1, 2 , :) - # plot32[] = view(var1, 3 , :) - # plot33[] = view(var1, 4 , :) - # plot34[] = view(var1, 5 , :) - # plot35[] = view(var1, 6 , :) - # plot36[] = view(var1, 7 , :) - # plot37[] = view(var1, 8 , :) - # plot38[] = view(var1, 9 , :) - # plot39[] = view(var1, 10, :) - - # plot40[] = view(var2, 1 , :) - # plot41[] = view(var2, 2 , :) - # plot42[] = view(var2, 3 , :) - # plot43[] = view(var2, 4 , :) - # plot44[] = view(var2, 5 , :) - # plot45[] = view(var2, 6 , :) - # plot46[] = view(var2, 7 , :) - # plot47[] = view(var2, 8 , :) - # plot48[] = view(var2, 9 , :) - # plot49[] = view(var2, 10, :) - - # plot50[] = view(var3, 1 , :) - # plot51[] = view(var3, 2 , :) - # plot52[] = view(var3, 3 , :) - # plot53[] = view(var3, 4 , :) - # plot54[] = view(var3, 5 , :) - # plot55[] = view(var3, 6 , :) - # plot56[] = view(var3, 7 , :) - # plot57[] = view(var3, 8 , :) - # plot58[] = view(var3, 9 , :) - # plot59[] = view(var3, 10, :) - - # plot60[] = view(var4, 1 , :) - # plot61[] = view(var4, 2 , :) - # plot62[] = view(var4, 3 , :) - # plot63[] = view(var4, 4 , :) - # plot64[] = view(var4, 5 , :) - # plot65[] = view(var4, 6 , :) - # plot66[] = view(var4, 7 , :) - # plot67[] = view(var4, 8 , :) - # plot68[] = view(var4, 9 , :) - # plot69[] = view(var4, 10, :) - end - # end-thinkingPeriod+2; +2 because initialize logitLog = zeros(10, 2) - # _modelRespond = logitLog[:, end-thinkingPeriod+2:end] # answer count during thinking period - # _modelRespond = [sum(i) for i in eachrow(_modelRespond)] - # modelRespond = isequal.(isequal.(_modelRespond, 0), 0) - - # display(fig1) - # sleep(1) - # if k % 3 == 0 - # firedNeurons_t1 = zeros(1) - # logitLog = zeros(10, 2) - # var1 = zeros(10, 2) - # var2 = zeros(10, 2) - # var3 = zeros(10, 2) - # var4 = zeros(10, 2) - # end - - # # if predict == OneHotArrays.onehot(label, labelDict) - # # println("model train $label successfully, $k tries") - # # # wait(display(fig1)) - - # # firedNeurons_t1 = zeros(1) - # # logitLog = zeros(10, 2) - # # var1 = zeros(10, 2) - # # var2 = zeros(10, 2) - # # var3 = zeros(10, 2) - # # var4 = zeros(10, 2) - # # break - # # end - - # if k == maxRepeatRound - # # println("model train $label unsuccessfully, $maxRepeatRound tries, skip training") - # # display(fig1) - # firedNeurons_t1 = zeros(1) - # logitLog = zeros(10, 2) - # var1 = zeros(10, 2) - # var2 = zeros(10, 2) - # var3 = zeros(10, 2) - # var4 = zeros(10, 2) - # break - # end - end - - next!(p) - end - - if epoch > 200 - # check accuracy - println("validating model") - percentCorrect = validate(model, validateData, labelDict) - bestAccuracy = percentCorrect > bestAccuracy ? percentCorrect : bestAccuracy - println("$modelname model accuracy is $percentCorrect %, best accuracy is $bestAccuracy") - end - end -end - -function validate(model, dataset, labelDict) - totalAnswerCorrectly = 0 # score - totalSignal = 0 - thinkingPeriod = 16 # 1000-784 = 216 - predict = [0] |> device - - n = length(dataset) - println("n $n") - p = Progress(n, dt=1.0) # minimum update interval: 1 second - for (imgBatch, labels) in dataset - signal = spikeGenerator(imgBatch, [0.05, 0.1, 0.2, 0.3, 0.5], noise=(true, 1, 0.5), copies=18) - if length(size(signal)) == 3 - row, col, sequence = size(signal) - batch = 1 - else - row, col, sequence, batch = size(signal) - end - - # encode labels - correctAnswer = onehotbatch(labels, labelDict) # (choices, batch) - - # insert data into model sequencially - for timestep in 1:(sequence + thinkingPeriod) # sMNIST has 784 timestep(pixel) + thinking period = 1000 timestep - if timestep <= sequence - current_pixel = view(signal, :, :, timestep, :) |> device - else - current_pixel = zeros(row, col, batch) |> device # dummy input in "thinking" period - end - - if timestep == 1 # tell a model to start learning. 1-time only - predict = [0] |> device - elseif timestep == (sequence+thinkingPeriod) - else - end - - # predict - logit, _ = model(current_pixel) - - if timestep < sequence # online learning, 1-by-1 timestep - # no error calculation - elseif timestep == sequence # online learning, 1-by-1 timestep - # no error calculation - elseif timestep > sequence && timestep < sequence+thinkingPeriod # collect answer - predict = length(predict) == 1 ? logit : predict .+ logit # (logit, batch) - elseif timestep == sequence+thinkingPeriod - predict = length(predict) == 1 ? logit : predict .+ logit # (logit, batch) - else - error("undefined condition line $(@__LINE__)") - end - end - - predict_cpu = predict |> cpu - _predict_label = mapslices(GeneralUtils.vectorMax, predict_cpu; dims=1) - s = sum(_predict_label, dims=1) - if 0 ∉ s - predict_label = [] - for i in eachcol(_predict_label) - _label = findall(i) .- 1 - if length(_label) == 1 - append!(predict_label, _label) - else - push!(predict_label, -1) # predict more than 1 label. add non-count label. - end - end - answerCorrectly = sum([x == y for (x,y) in zip(predict_label, labels)]) - totalAnswerCorrectly += answerCorrectly - totalSignal += batch - end - - next!(p) - end - - percentCorrect = totalAnswerCorrectly * 100.0 / totalSignal - - return percentCorrect::Float64 -end - -""" inputsignals is normal column-major julia matrix in (row, col, batch) dimension - - each threshold scan return 2 vectors. 1 for +, 1 for - - - noise = (true/false, row, col, probability) -""" -function spikeGenerator(inputsignals, thresholds=[1.0]; noise=(false, 1, 0.5), copies=0) - s = length(size(inputsignals)) - ar = [] # holding all signals that are scanned - for slice in eachslice(inputsignals, dims=s) - signal_jl = reshape(slice, (:, 1)) # python array is row-major - signal_pytensor = torch.from_numpy( np.asarray(signal_jl) ) - - arr = [] # holding signal that is scanned by several thresholds - for threshold in thresholds - spike_py = spikegen.delta(signal_pytensor, threshold=threshold, off_spike=true) - _spike_jl = pyconvert(Array, spike_py.data.numpy()) - spike_jl = reshape(_spike_jl, (1, :)) # reshape back to julia's column-major - spike_jl1 = isequal.(spike_jl, 1) - spike_jl2 = isequal.(spike_jl, -1) - arr = length(arr) == 0 ? [spike_jl1; spike_jl2] : [arr; spike_jl1; spike_jl2] - end - arrSize = [size(arr)...] - arr = reshape(arr, (arrSize[1], 1, arrSize[2])) # reshape into (row, 1, timestep) - - # multiply col - if copies > 0 - a = deepcopy(arr) - for i in 1:copies - arr = cat(arr, a, dims=2) - end - end - - if noise[1] == true - arrSize = [size(arr)...] - n = noiseGenerator(arrSize[1], noise[2], arrSize[3], prob=noise[3]) - arr = cat(arr, n, dims=2) # concatenate into (row, signal:noise, timestep) - end - - # concatenate into (row, signal:noise, timestep, batch) - ar = length(ar) == 0 ? arr : [ar;;;;arr] - end - return ar -end - -function noiseGenerator(row, col, z; prob=0.5) - spike_prob = torch.rand(row, col, z) * prob - spike_rand = spikegen.rate_conv(spike_prob) - noise = isequal.(pyconvert(Array, spike_rand.data.numpy()), 1) - - return noise -end - -# function arrayMax(x) -# if sum(GeneralUtils.isNotEqual.(x, 0)) == 0 # guard against all-zeros array -# return GeneralUtils.isNotEqual.(x, 0) -# else -# return isequal.(x, maximum(x)) -# end -# end -# arraySliceMax(x) = mapslices(arrayMax, x; dims=1) - -function main() - filelocation = string(@__DIR__) - - filename = "$modelname.jl163" - - training_start_time = Dates.now() - println("$modelname program started $training_start_time") - - model = generate_snn(filename, filelocation) - - trainDataset, validateDataset, labelDict = data_loader() - - train_snn(model, trainDataset, validateDataset, labelDict) - - finish_training_time = Dates.now() - println("training done, $training_start_time ==> $finish_training_time ") - println(" ///////////////////////////////////////////////////////////////////////") -end - -# only runs main() if julia isn’t started interactively -# https://discourse.julialang.org/t/scripting-like-a-julian/50707 -!isinteractive() && main() -#------------------------------------------------------------------------------------------------100 - - - - - - diff --git a/.gitignore 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"6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +CondaPkg = "992eb4ea-22a4-4c89-a5bb-47a3300528ab" +Cthulhu = "f68482b8-f384-11e8-15f7-abe071a5a75f" +Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" +GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a" +GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" +GeneralUtils = "c6c72f09-b708-4ac8-ac7c-2084d70108fe" +IronpenGPU = "3d5396ea-818e-43fc-a9d3-164248e840cd" +JSON3 = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" +MLDatasets = "eb30cadb-4394-5ae3-aed4-317e484a6458" +MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" +OneHotArrays = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" +ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca" +PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" +Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +SliceMap = "82cb661a-3f19-5665-9e27-df437c7e54c8" +StaticArrays = 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