refractoring
This commit is contained in:
@@ -99,18 +99,18 @@ end
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#------------------------------------------------------------------------------------------------100
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""" passthrough_neuron forward()
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""" passthroughNeuron forward()
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"""
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function (n::passthrough_neuron)(kfn::knowledgeFn)
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function (n::passthroughNeuron)(kfn::knowledgeFn)
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n.timeStep = kfn.timeStep
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# n.global_tick = kfn.global_tick
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end
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#------------------------------------------------------------------------------------------------100
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""" lif_neuron forward()
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""" lifNeuron forward()
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"""
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function (n::lif_neuron)(kfn::knowledgeFn)
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function (n::lifNeuron)(kfn::knowledgeFn)
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n.timeStep = kfn.timeStep
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# pulling other neuron's firing status at time t
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@@ -151,9 +151,9 @@ end
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#------------------------------------------------------------------------------------------------100
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""" alif_neuron forward()
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""" alifNeuron forward()
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"""
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function (n::alif_neuron)(kfn::knowledgeFn)
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function (n::alifNeuron)(kfn::knowledgeFn)
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n.timeStep = kfn.timeStep
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n.z_i_t = getindex(kfn.firedNeurons_t0, n.subscriptionList)
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@@ -197,10 +197,10 @@ end
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#------------------------------------------------------------------------------------------------100
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""" linear_neuron forward()
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""" linearNeuron forward()
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In this implementation, each output neuron is fully connected to every lif and alif neuron.
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"""
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function (n::linear_neuron)(kfn::T) where T<:knowledgeFn
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function (n::linearNeuron)(kfn::T) where T<:knowledgeFn
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n.timeStep = kfn.timeStep
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# pulling other neuron's firing status at time t
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14
src/learn.jl
14
src/learn.jl
@@ -82,15 +82,15 @@ function learn!(kfn::kfn_1, correctAnswer::AbstractVector)
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end
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end
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""" passthrough_neuron learn()
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""" passthroughNeuron learn()
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"""
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function learn!(n::passthrough_neuron, kfn::knowledgeFn)
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function learn!(n::passthroughNeuron, kfn::knowledgeFn)
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# skip
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end
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""" lif learn()
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"""
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function learn!(n::lif_neuron, error::Number)
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function learn!(n::lifNeuron, error::Number)
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n.eRec = n.phi * n.epsilonRec
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ΔwRecChange = n.eta * error * n.eRec
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@@ -98,9 +98,9 @@ function learn!(n::lif_neuron, error::Number)
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reset_epsilonRec!(n)
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end
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""" alif_neuron learn()
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""" alifNeuron learn()
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"""
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function learn!(n::alif_neuron, error::Number)
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function learn!(n::alifNeuron, error::Number)
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n.eRec_v = n.phi * n.epsilonRec
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n.eRec_a = -n.phi * n.beta * n.epsilonRecA
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n.eRec = n.eRec_v + n.eRec_a
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@@ -111,9 +111,9 @@ function learn!(n::alif_neuron, error::Number)
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reset_epsilonRecA!(n)
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end
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""" linear_neuron learn()
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""" linearNeuron learn()
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"""
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function learn!(n::linear_neuron, error::Number)
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function learn!(n::linearNeuron, error::Number)
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n.eRec = n.phi * n.epsilonRec
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ΔwRecChange = n.eta * error * n.eRec
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@@ -15,7 +15,7 @@ using ..types
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#------------------------------------------------------------------------------------------------100
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function timestep_forward!(x::passthrough_neuron)
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function timestep_forward!(x::passthroughNeuron)
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x.z_t = x.z_t1
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end
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@@ -34,30 +34,30 @@ reset_v_t!(n::neuron) = n.v_t = n.vRest
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reset_z_t!(n::computeNeuron) = n.z_t = false
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reset_epsilonRec!(n::computeNeuron) = n.epsilonRec = n.epsilonRec * 0.0
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reset_epsilonRec!(n::outputNeuron) = n.epsilonRec = n.epsilonRec * 0.0
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reset_epsilonRecA!(n::alif_neuron) = n.epsilonRecA = n.epsilonRecA * 0.0
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reset_epsilonRecA!(n::alifNeuron) = n.epsilonRecA = n.epsilonRecA * 0.0
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reset_epsilon_in!(n::computeNeuron) = n.epsilon_in = isnothing(n.epsilon_in) ? nothing : n.epsilon_in * 0.0
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reset_error!(n::Union{computeNeuron, linear_neuron}) = n.error = nothing
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reset_error!(n::Union{computeNeuron, linearNeuron}) = n.error = nothing
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reset_w_in_change!(n::computeNeuron) = n.w_in_change = isnothing(n.w_in_change) ? nothing : n.w_in_change * 0.0
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reset_wRecChange!(n::Union{computeNeuron, outputNeuron}) = n.wRecChange = n.wRecChange * 0.0
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reset_a!(n::alif_neuron) = n.a = n.a * 0.0
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reset_a!(n::alifNeuron) = n.a = n.a * 0.0
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reset_reg_voltage_a!(n::computeNeuron) = n.reg_voltage_a = n.reg_voltage_a * 0.0
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reset_reg_voltage_b!(n::computeNeuron) = n.reg_voltage_b = n.reg_voltage_b * 0.0
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reset_reg_voltage_error!(n::computeNeuron) = n.reg_voltage_error = n.reg_voltage_error * 0.0
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reset_firing_counter!(n::computeNeuron) = n.firingCounter = n.firingCounter * 0.0
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reset_firing_diff!(n::Union{computeNeuron, linear_neuron}) = n.firingDiff = n.firingDiff * 0.0
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reset_refractoryCounter!(n::Union{computeNeuron, linear_neuron}) = n.refractoryCounter = n.refractoryCounter * 0.0
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reset_firing_counter!(n::Union{computeNeuron, outputNeuron}) = n.firingCounter = n.firingCounter * 0.0
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reset_firing_diff!(n::Union{computeNeuron, linearNeuron}) = n.firingDiff = n.firingDiff * 0.0
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reset_refractoryCounter!(n::Union{computeNeuron, outputNeuron}) = n.refractoryCounter = n.refractoryCounter * 0.0
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# reset function for output neuron
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reset_epsilon_j!(n::linear_neuron) = n.epsilon_j = n.epsilon_j * 0.0
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reset_out_t!(n::linear_neuron) = n.out_t = n.out_t * 0.0
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reset_w_out_change!(n::linear_neuron) = n.w_out_change = n.w_out_change * 0.0
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reset_b_change!(n::linear_neuron) = n.b_change = n.b_change * 0.0
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reset_epsilon_j!(n::linearNeuron) = n.epsilon_j = n.epsilon_j * 0.0
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reset_out_t!(n::linearNeuron) = n.out_t = n.out_t * 0.0
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reset_w_out_change!(n::linearNeuron) = n.w_out_change = n.w_out_change * 0.0
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reset_b_change!(n::linearNeuron) = n.b_change = n.b_change * 0.0
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""" Reset a part of learning-related params that used to collect learning history during learning
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session
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"""
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# function reset_learning_no_wchange!(n::lif_neuron)
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# function reset_learning_no_wchange!(n::lifNeuron)
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# reset_epsilonRec!(n)
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# # reset_v_t!(n)
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# # reset_z_t!(n)
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@@ -73,7 +73,7 @@ reset_b_change!(n::linear_neuron) = n.b_change = n.b_change * 0.0
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# # # it will stay in refractory state forever
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# # reset_refractory_state_active!(n)
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# end
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# function reset_learning_no_wchange!(n::Union{alif_neuron, elif_neuron})
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# function reset_learning_no_wchange!(n::Union{alifNeuron, elif_neuron})
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# reset_epsilonRec!(n)
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# reset_epsilonRecA!(n)
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# reset_v_t!(n)
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@@ -91,7 +91,7 @@ reset_b_change!(n::linear_neuron) = n.b_change = n.b_change * 0.0
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# # it will stay in refractory state forever
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# reset_refractory_state_active!(n)
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# end
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# function reset_learning_no_wchange!(n::linear_neuron)
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# function reset_learning_no_wchange!(n::linearNeuron)
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# reset_epsilon_j!(n)
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# reset_out_t!(n)
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# reset_error!(n)
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@@ -99,7 +99,7 @@ reset_b_change!(n::linear_neuron) = n.b_change = n.b_change * 0.0
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""" Reset all learning-related params at the END of learning session
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"""
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function resetLearningParams!(n::lif_neuron)
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function resetLearningParams!(n::lifNeuron)
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reset_epsilonRec!(n)
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reset_wRecChange!(n)
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# reset_v_t!(n)
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@@ -111,7 +111,7 @@ function resetLearningParams!(n::lif_neuron)
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# refractory state, it will stay in refractory state forever
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reset_refractoryCounter!(n)
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end
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function resetLearningParams!(n::alif_neuron)
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function resetLearningParams!(n::alifNeuron)
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reset_epsilonRec!(n)
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reset_epsilonRecA!(n)
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reset_wRecChange!(n)
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@@ -126,14 +126,14 @@ function resetLearningParams!(n::alif_neuron)
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reset_refractoryCounter!(n)
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end
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# function reset_learning_no_wchange!(n::passthrough_neuron)
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# function reset_learning_no_wchange!(n::passthroughNeuron)
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# end
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function resetLearningParams!(n::passthrough_neuron)
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function resetLearningParams!(n::passthroughNeuron)
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# skip
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end
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function resetLearningParams!(n::linear_neuron)
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function resetLearningParams!(n::linearNeuron)
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reset_epsilonRec!(n)
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reset_wRecChange!(n)
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reset_v_t!(n)
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@@ -196,7 +196,7 @@ end
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""" Regulates membrane potential to stay under v_th, output is weight change
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"""
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function cal_v_reg!(n::lif_neuron)
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function cal_v_reg!(n::lifNeuron)
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# retified linear function
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component_a1 = n.v_t1 - n.v_th < 0 ? 0 : (n.v_t1 - n.v_th)^2
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component_a2 = -n.v_t1 - n.v_th < 0 ? 0 : (-n.v_t1 - n.v_th)^2
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@@ -207,7 +207,7 @@ function cal_v_reg!(n::lif_neuron)
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n.reg_voltage_b = n.reg_voltage_b + (component_b * n.epsilonRec)
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end
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function cal_v_reg!(n::alif_neuron)
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function cal_v_reg!(n::alifNeuron)
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# retified linear function
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component_a1 = n.v_t1 - n.av_th < 0 ? 0 : (n.v_t1 - n.av_th)^2
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component_a2 = -n.v_t1 - n.av_th < 0 ? 0 : (-n.v_t1 - n.av_th)^2
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136
src/types.jl
136
src/types.jl
@@ -2,8 +2,8 @@ module types
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export
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# struct
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IronpenStruct, model, knowledgeFn, lif_neuron, alif_neuron, linear_neuron,
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kfn_1, inputNeuron, computeNeuron, neuron, outputNeuron, passthrough_neuron,
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IronpenStruct, model, knowledgeFn, lifNeuron, alifNeuron, linearNeuron,
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kfn_1, inputNeuron, computeNeuron, neuron, outputNeuron, passthroughNeuron,
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# function
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instantiate_custom_types, init_neuron, populate_neuron,
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@@ -42,7 +42,7 @@ end
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# Example
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I_kfnparams = Dict(
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:type => "lif_neuron",
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:type => "lifNeuron",
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:v_t1 => 0.0, # neuron membrane potential at time = t+1
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:v_th => 2.0, # neuron firing threshold (this value is treated as maximum bound if I use auto generate)
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:z_t => false, # neuron firing status at time = t
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@@ -120,7 +120,7 @@ end
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# Example
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lif_neuron_params = Dict(
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:type => "lif_neuron",
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:type => "lifNeuron",
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:v_th => 1.2, # neuron firing threshold (this value is treated as maximum bound if I use auto generate)
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:z_t => false, # neuron firing status at time = t
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:gammaPd => 0.3, # discount factor. The value is from the paper
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@@ -130,7 +130,7 @@ end
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)
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alif_neuron_params = Dict(
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:type => "alif_neuron",
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:type => "alifNeuron",
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:v_th => 1.2, # neuron firing threshold (this value is treated as maximum bound if I use auto generate)
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:z_t => false, # neuron firing status at time = t
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:gammaPd => 0.3, # discount factor. The value is from the paper
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@@ -146,7 +146,7 @@ end
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)
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linear_neuron_params = Dict(
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:type => "linear_neuron",
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:type => "linearNeuron",
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:k => 0.9, # output leakink coefficient
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:tau_out => 5.0, # output time constant in millisecond. It should equals to time use for 1 sequence
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:out => 0.0, # neuron's output value store here
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@@ -166,7 +166,7 @@ end
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:neuron_w_rec_generation_pattern => "random",
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:neuron_v_t_default => 0.5,
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:neuron_voltage_drop_percentage => "100%",
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:neuron_firing_rate_target => 50.0,
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:neuronFiringRateTarget => 50.0,
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:neuron_learning_rate => 0.01,
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:neuron_c_reg => 0.0001,
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:neuron_c_reg_v => 0.0001,
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@@ -182,23 +182,23 @@ function kfn_1(kfnParams::Dict)
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kfn.kfnParams = kfnParams
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kfn.knowledgeFnName = kfn.kfnParams[:knowledgeFnName]
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if kfn.kfnParams[:compute_neuron_number] < kfn.kfnParams[:total_input_port]
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if kfn.kfnParams[:computeNeuronNumber] < kfn.kfnParams[:totalInputPort]
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throw(error("number of compute neuron must be greater than input neuron"))
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end
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# Bn
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if kfn.kfnParams[:Bn] == "random"
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kfn.Bn = [Random.rand(0:0.001:1) for i in 1:kfn.kfnParams[:compute_neuron_number]]
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kfn.Bn = [Random.rand(0:0.001:1) for i in 1:kfn.kfnParams[:computeNeuronNumber]]
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else # in case I want to specify manually
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kfn.Bn = [kfn.kfnParams[:Bn] for i in 1:kfn.kfnParams[:compute_neuron_number]]
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kfn.Bn = [kfn.kfnParams[:Bn] for i in 1:kfn.kfnParams[:computeNeuronNumber]]
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end
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# assign neurons ID by their position in kfn.neurons array because I think it is
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# straight forward way
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# add input port
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for (k, v) in kfn.kfnParams[:input_port]
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current_type = kfn.kfnParams[:input_port][k]
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for (k, v) in kfn.kfnParams[:inputPort]
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current_type = kfn.kfnParams[:inputPort][k]
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for i = 1:current_type[:numbers]
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n_id = length(kfn.neuronsArray) + 1
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neuron = init_neuron(n_id, current_type[:params], kfn.kfnParams)
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@@ -216,22 +216,22 @@ function kfn_1(kfnParams::Dict)
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end
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end
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for i = 1:kfn.kfnParams[:output_port][:numbers]
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neuron = init_neuron(i, kfn.kfnParams[:output_port][:params],
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for i = 1:kfn.kfnParams[:outputPort][:numbers]
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neuron = init_neuron(i, kfn.kfnParams[:outputPort][:params],
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kfn.kfnParams)
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push!(kfn.outputNeuronsArray, neuron)
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end
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for n in kfn.neuronsArray
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if typeof(n) <: computeNeuron
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n.firingRateTarget = kfn.kfnParams[:neuron_firing_rate_target]
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n.firingRateTarget = kfn.kfnParams[:neuronFiringRateTarget]
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end
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end
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# excitatory neuron to inhabitory neuron = 60:40 % of computeNeuron
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ex_number = Int(floor(0.6 * kfn.kfnParams[:compute_neuron_number]))
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ex_number = Int(floor(0.6 * kfn.kfnParams[:computeNeuronNumber]))
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ex_n = [1 for i in 1:ex_number]
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in_number = kfn.kfnParams[:compute_neuron_number] - ex_number
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in_number = kfn.kfnParams[:computeNeuronNumber] - ex_number
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in_n = [-1 for i in 1:in_number]
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ex_in = shuffle!([ex_n; in_n])
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@@ -268,11 +268,11 @@ end
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#------------------------------------------------------------------------------------------------100
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""" passthrough_neuron struct
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""" passthroughNeuron struct
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"""
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Base.@kwdef mutable struct passthrough_neuron <: inputNeuron
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Base.@kwdef mutable struct passthroughNeuron <: inputNeuron
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id::Union{Int64,Nothing} = nothing # ID of this neuron which is it position in knowledgeFn array
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type::String = "passthrough_neuron"
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type::String = "passthroughNeuron"
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knowledgeFnName::Union{String,Nothing} = nothing # knowledgeFn that this neuron belongs to
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z_t::Bool = false
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z_t1::Bool = false
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@@ -280,8 +280,8 @@ Base.@kwdef mutable struct passthrough_neuron <: inputNeuron
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ExInType::Integer = 1 # 1 excitatory, -1 inhabitory. input neuron is always excitatory
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end
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function passthrough_neuron(params::Dict)
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n = passthrough_neuron()
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function passthroughNeuron(params::Dict)
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n = passthroughNeuron()
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field_names = fieldnames(typeof(n))
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for i in field_names
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if i in keys(params)
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@@ -298,11 +298,11 @@ end
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#------------------------------------------------------------------------------------------------100
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""" lif_neuron struct
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""" lifNeuron struct
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"""
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Base.@kwdef mutable struct lif_neuron <: computeNeuron
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Base.@kwdef mutable struct lifNeuron <: computeNeuron
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id::Union{Int64,Nothing} = nothing # this neuron ID i.e. position of this neuron in knowledgeFn
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type::String = "lif_neuron"
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type::String = "lifNeuron"
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ExInType::Integer = 1 # 1 excitatory, -1 inhabitory
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# Bn::Union{Float64,Nothing} = Random.rand() # Bias for neuron error
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knowledgeFnName::Union{String,Nothing} = nothing # knowledgeFn that this neuron belongs to
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@@ -361,7 +361,7 @@ end
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# Example
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lif_neuron_params = Dict(
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:type => "lif_neuron",
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:type => "lifNeuron",
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:v_th => 1.2, # neuron firing threshold (this value is treated as maximum bound if I use auto generate)
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:z_t => false, # neuron firing status at time = t
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:gammaPd => 0.3, # discount factor. The value is from the paper
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@@ -370,10 +370,10 @@ end
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:tau_m => 5.0, # membrane time constant in millisecond. It should equals to time use for 1 sequence
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)
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neuron1 = lif_neuron(lif_neuron_params)
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neuron1 = lifNeuron(lif_neuron_params)
|
||||
"""
|
||||
function lif_neuron(params::Dict)
|
||||
n = lif_neuron()
|
||||
function lifNeuron(params::Dict)
|
||||
n = lifNeuron()
|
||||
field_names = fieldnames(typeof(n))
|
||||
for i in field_names
|
||||
if i in keys(params)
|
||||
@@ -390,11 +390,11 @@ end
|
||||
|
||||
#------------------------------------------------------------------------------------------------100
|
||||
|
||||
""" alif_neuron struct
|
||||
""" alifNeuron struct
|
||||
"""
|
||||
Base.@kwdef mutable struct alif_neuron <: computeNeuron
|
||||
Base.@kwdef mutable struct alifNeuron <: computeNeuron
|
||||
id::Union{Int64,Nothing} = nothing # this neuron ID i.e. position of this neuron in knowledgeFn
|
||||
type::String = "alif_neuron"
|
||||
type::String = "alifNeuron"
|
||||
ExInType::Integer = -1 # 1 excitatory, -1 inhabitory
|
||||
# Bn::Union{Float64,Nothing} = Random.rand() # Bias for neuron error
|
||||
knowledgeFnName::Union{String,Nothing} = nothing # knowledgeFn that this neuron belongs to
|
||||
@@ -462,7 +462,7 @@ end
|
||||
# Example
|
||||
|
||||
alif_neuron_params = Dict(
|
||||
:type => "alif_neuron",
|
||||
:type => "alifNeuron",
|
||||
:v_th => 1.2, # neuron firing threshold (this value is treated as maximum bound if I
|
||||
use auto generate)
|
||||
:z_t => false, # neuron firing status at time = t
|
||||
@@ -479,10 +479,10 @@ end
|
||||
:a => 0.0,
|
||||
)
|
||||
|
||||
neuron1 = alif_neuron(alif_neuron_params)
|
||||
neuron1 = alifNeuron(alif_neuron_params)
|
||||
"""
|
||||
function alif_neuron(params::Dict)
|
||||
n = alif_neuron()
|
||||
function alifNeuron(params::Dict)
|
||||
n = alifNeuron()
|
||||
field_names = fieldnames(typeof(n))
|
||||
for i in field_names
|
||||
if i in keys(params)
|
||||
@@ -498,11 +498,11 @@ function alif_neuron(params::Dict)
|
||||
end
|
||||
|
||||
#------------------------------------------------------------------------------------------------100
|
||||
""" linear_neuron struct
|
||||
""" linearNeuron struct
|
||||
"""
|
||||
Base.@kwdef mutable struct linear_neuron <: outputNeuron
|
||||
Base.@kwdef mutable struct linearNeuron <: outputNeuron
|
||||
id::Union{Int64,Nothing} = nothing # ID of this neuron which is it position in knowledgeFn array
|
||||
type::String = "linear_neuron"
|
||||
type::String = "linearNeuron"
|
||||
knowledgeFnName::Union{String,Nothing} = nothing # knowledgeFn that this neuron belongs to
|
||||
subscriptionList::Union{Array{Int64},Nothing} = nothing # list of other neuron that this neuron synapse subscribed to
|
||||
timeStep::Union{Number,Nothing} = nothing # current time
|
||||
@@ -549,16 +549,16 @@ end
|
||||
# Example
|
||||
|
||||
linear_neuron_params = Dict(
|
||||
:type => "linear_neuron",
|
||||
:type => "linearNeuron",
|
||||
:k => 0.9, # output leakink coefficient
|
||||
:tau_out => 5.0, # output time constant in millisecond. It should equals to time use for 1 sequence
|
||||
:out => 0.0, # neuron's output value store here
|
||||
)
|
||||
|
||||
neuron1 = linear_neuron(linear_neuron_params)
|
||||
neuron1 = linearNeuron(linear_neuron_params)
|
||||
"""
|
||||
function linear_neuron(params::Dict)
|
||||
n = linear_neuron()
|
||||
function linearNeuron(params::Dict)
|
||||
n = linearNeuron()
|
||||
field_names = fieldnames(typeof(n))
|
||||
for i in field_names
|
||||
if i in keys(params)
|
||||
@@ -592,15 +592,15 @@ function load_optimiser(optimiser_name::String; params::Union{Dict,Nothing} = no
|
||||
end
|
||||
end
|
||||
|
||||
function init_neuron!(id::Int64, n::passthrough_neuron, n_params::Dict, kfnParams::Dict)
|
||||
function init_neuron!(id::Int64, n::passthroughNeuron, n_params::Dict, kfnParams::Dict)
|
||||
n.id = id
|
||||
n.knowledgeFnName = kfnParams[:knowledgeFnName]
|
||||
end
|
||||
|
||||
# function init_neuron!(id::Int64, n::lif_neuron, kfnParams::Dict)
|
||||
# function init_neuron!(id::Int64, n::lifNeuron, kfnParams::Dict)
|
||||
# n.id = id
|
||||
# n.knowledgeFnName = kfnParams[:knowledgeFnName]
|
||||
# subscription_options = shuffle!([1:(kfnParams[:input_neuron_number]+kfnParams[:compute_neuron_number])...])
|
||||
# subscription_options = shuffle!([1:(kfnParams[:input_neuron_number]+kfnParams[:computeNeuronNumber])...])
|
||||
# if typeof(kfnParams[:synaptic_connection_number]) == String
|
||||
# percent = parse(Int, kfnParams[:synaptic_connection_number][1:end-1]) / 100
|
||||
# synaptic_connection_number = floor(length(subscription_options) * percent)
|
||||
@@ -614,12 +614,12 @@ end
|
||||
# n.alpha = calculate_α(n)
|
||||
# end
|
||||
|
||||
function init_neuron!(id::Int64, n::lif_neuron, n_params::Dict, kfnParams::Dict)
|
||||
function init_neuron!(id::Int64, n::lifNeuron, n_params::Dict, kfnParams::Dict)
|
||||
n.id = id
|
||||
n.knowledgeFnName = kfnParams[:knowledgeFnName]
|
||||
subscription_options = shuffle!([1:kfnParams[:total_neurons]...])
|
||||
subscription_options = shuffle!([1:kfnParams[:totalNeurons]...])
|
||||
subscription_numbers = Int(floor(n_params[:synaptic_connection_number] *
|
||||
kfnParams[:total_neurons] / 100.0))
|
||||
kfnParams[:totalNeurons] / 100.0))
|
||||
n.subscriptionList = [pop!(subscription_options) for i = 1:subscription_numbers]
|
||||
|
||||
# prevent subscription to itself by removing this neuron id
|
||||
@@ -632,13 +632,13 @@ function init_neuron!(id::Int64, n::lif_neuron, n_params::Dict, kfnParams::Dict)
|
||||
n.alpha = calculate_α(n)
|
||||
end
|
||||
|
||||
function init_neuron!(id::Int64, n::alif_neuron, n_params::Dict,
|
||||
function init_neuron!(id::Int64, n::alifNeuron, n_params::Dict,
|
||||
kfnParams::Dict)
|
||||
n.id = id
|
||||
n.knowledgeFnName = kfnParams[:knowledgeFnName]
|
||||
subscription_options = shuffle!([1:kfnParams[:total_neurons]...])
|
||||
subscription_options = shuffle!([1:kfnParams[:totalNeurons]...])
|
||||
subscription_numbers = Int(floor(n_params[:synaptic_connection_number] *
|
||||
kfnParams[:total_neurons] / 100.0))
|
||||
kfnParams[:totalNeurons] / 100.0))
|
||||
n.subscriptionList = [pop!(subscription_options) for i = 1:subscription_numbers]
|
||||
|
||||
# prevent subscription to itself by removing this neuron id
|
||||
@@ -657,13 +657,13 @@ function init_neuron!(id::Int64, n::alif_neuron, n_params::Dict,
|
||||
end
|
||||
|
||||
|
||||
function init_neuron!(id::Int64, n::linear_neuron, n_params::Dict, kfnParams::Dict)
|
||||
function init_neuron!(id::Int64, n::linearNeuron, n_params::Dict, kfnParams::Dict)
|
||||
n.id = id
|
||||
n.knowledgeFnName = kfnParams[:knowledgeFnName]
|
||||
|
||||
subscription_options = shuffle!([kfnParams[:total_input_port]+1 : kfnParams[:total_neurons]...])
|
||||
subscription_options = shuffle!([kfnParams[:totalInputPort]+1 : kfnParams[:totalNeurons]...])
|
||||
subscription_numbers = Int(floor(n_params[:synaptic_connection_number] *
|
||||
kfnParams[:total_compute_neuron] / 100.0))
|
||||
kfnParams[:totalComputeNeuron] / 100.0))
|
||||
n.subscriptionList = [pop!(subscription_options) for i = 1:subscription_numbers]
|
||||
n.synapticStrength = rand(-5:0.1:-3, length(n.subscriptionList))
|
||||
|
||||
@@ -695,14 +695,14 @@ function instantiate_custom_types(params::Union{Dict,Nothing} = nothing)
|
||||
return model()
|
||||
elseif type == "knowledgeFn"
|
||||
return knowledgeFn()
|
||||
elseif type == "passthrough_neuron"
|
||||
return passthrough_neuron(params)
|
||||
elseif type == "lif_neuron"
|
||||
return lif_neuron(params)
|
||||
elseif type == "alif_neuron"
|
||||
return alif_neuron(params)
|
||||
elseif type == "linear_neuron"
|
||||
return linear_neuron(params)
|
||||
elseif type == "passthroughNeuron"
|
||||
return passthroughNeuron(params)
|
||||
elseif type == "lifNeuron"
|
||||
return lifNeuron(params)
|
||||
elseif type == "alifNeuron"
|
||||
return alifNeuron(params)
|
||||
elseif type == "linearNeuron"
|
||||
return linearNeuron(params)
|
||||
else
|
||||
return nothing
|
||||
end
|
||||
@@ -716,17 +716,17 @@ end
|
||||
# function add_neuron!(neuron_Dict::Dict, kfn::knowledgeFn)
|
||||
# id = length(kfn.neuronsArray) + 1
|
||||
# neuron = init_neuron(id, neuron_Dict, kfn.kfnParams,
|
||||
# total_neurons = (length(kfn.neuronsArray) + 1))
|
||||
# totalNeurons = (length(kfn.neuronsArray) + 1))
|
||||
# push!(kfn.neuronsArray, neuron)
|
||||
|
||||
# # Randomly select an output neuron to add a new neuron to
|
||||
# add_n_output_n!(Random.rand(kfn.outputNeuronsArray), id)
|
||||
# end
|
||||
|
||||
calculate_α(neuron::lif_neuron) = exp(-neuron.delta / neuron.tau_m)
|
||||
calculate_α(neuron::alif_neuron) = exp(-neuron.delta / neuron.tau_m)
|
||||
calculate_ρ(neuron::alif_neuron) = exp(-neuron.delta / neuron.tau_a)
|
||||
calculate_k(neuron::linear_neuron) = exp(-neuron.delta / neuron.tau_out)
|
||||
calculate_α(neuron::lifNeuron) = exp(-neuron.delta / neuron.tau_m)
|
||||
calculate_α(neuron::alifNeuron) = exp(-neuron.delta / neuron.tau_m)
|
||||
calculate_ρ(neuron::alifNeuron) = exp(-neuron.delta / neuron.tau_a)
|
||||
calculate_k(neuron::linearNeuron) = exp(-neuron.delta / neuron.tau_out)
|
||||
|
||||
#------------------------------------------------------------------------------------------------100
|
||||
|
||||
|
||||
Reference in New Issue
Block a user