rm CondaPkg environment

2023-04-06 13:53:47 +07:00
parent 0a57ed7884
commit c43d949309
3329 changed files with 5725 additions and 447022 deletions
@@ -704,7 +704,7 @@ def kamada_kawai_layout(
        elif dim == 2:
            pos = circular_layout(G, dim=dim)
        else:
-            pos = {n: pt for n, pt in zip(G, np.linspace(0, 1, len(G)))}
+            pos = dict(zip(G, np.linspace(0, 1, len(G))))
    pos_arr = np.array([pos[n] for n in G])

    pos = _kamada_kawai_solve(dist_mtx, pos_arr, dim)
@@ -1151,7 +1151,7 @@ def arf_layout(

    References
    .. [1] "Self-Organization Applied to Dynamic Network Layout", M. Geipel,
-            International Jounral of Modern Physics C, 2007, Vol 18, No 10, pp. 1537-1549.
+            International Journal of Modern Physics C, 2007, Vol 18, No 10, pp. 1537-1549.
            https://doi.org/10.1142/S0129183107011558 https://arxiv.org/abs/0704.1748

    Returns
@@ -1220,7 +1220,7 @@ def arf_layout(
        if n_iter > max_iter:
            break
        n_iter += 1
-    return {node: pi for node, pi in zip(G.nodes(), p)}
+    return dict(zip(G.nodes(), p))


 def rescale_layout(pos, scale=1):
@@ -8,7 +8,7 @@ Usually, you will want the drawing to appear in a figure environment so
 you use ``to_latex(G, caption="A caption")``. If you want the raw
 drawing commands without a figure environment use :func:`to_latex_raw`.
 And if you want to write to a file instead of just returning the latex
-code as a string, use ``write_latex(G, "filname.tex", caption="A caption")``.
+code as a string, use ``write_latex(G, "filename.tex", caption="A caption")``.

 To construct a figure with subfigures for each graph to be shown, provide
 ``to_latex`` or ``write_latex`` a list of graphs, a list of subcaptions,
@@ -217,8 +217,8 @@ def to_latex_raw(
    if not isinstance(pos, dict):
        pos = nx.get_node_attributes(G, pos)
    if not pos:
-        # circular layout with radius 1
-        pos = {n: f"({round(2* 3.1415 * i / len(G), 3)}:10)" for i, n in enumerate(G)}
+        # circular layout with radius 2
+        pos = {n: f"({round(360.0 * i / len(G), 3)}:2)" for i, n in enumerate(G)}
    for node in G:
        if node not in pos:
            raise nx.NetworkXError(f"node {node} has no specified pos {pos}")
@@ -334,7 +334,7 @@ def to_latex(

    The TikZ drawing utility in LaTeX is used to draw the graph(s).
    If `Gbunch` is a graph, it is drawn in a figure environment.
-    If `Gbunch` is an iterable of graphs, each is drawn in a subfigure envionment
+    If `Gbunch` is an iterable of graphs, each is drawn in a subfigure environment
    within a single figure environment.

    If `as_document` is True, the figure is wrapped inside a document environment
@@ -397,7 +397,7 @@ def to_latex(
    n_rows : int
        The number of rows of subfigures to arrange for multiple graphs
    as_document : bool
-        Whether to wrap the latex code in a document envionment for compiling
+        Whether to wrap the latex code in a document environment for compiling
    document_wrapper : formatted text string with variable ``content``.
        This text is called to evaluate the content embedded in a document
        environment with a preamble setting up TikZ.
@@ -485,7 +485,7 @@ def write_latex(Gbunch, path, **options):

    This convenience function creates the latex drawing code as a string
    and writes that to a file ready to be compiled when `as_document` is True
-    or ready to be ``\\import``ed or `\\include``ed into your main LaTeX document.
+    or ready to be ``import`` ed or ``include`` ed into your main LaTeX document.

    The `path` argument can be a string filename or a file handle to write to.

@@ -494,75 +494,75 @@ def write_latex(Gbunch, path, **options):
    Gbunch : NetworkX graph or iterable of NetworkX graphs
        If Gbunch is a graph, it is drawn in a figure environment.
        If Gbunch is an iterable of graphs, each is drawn in a subfigure
-        envionment within a single figure environment.
+        environment within a single figure environment.
    path : filename
        Filename or file handle to write to
    options : dict
-        By default, TikZ is used with options: (others are ignored):
+        By default, TikZ is used with options: (others are ignored)::

-        pos : string or dict or list
-            The name of the node attribute on `G` that holds the position of each node.
-            Positions can be sequences of length 2 with numbers for (x,y) coordinates.
-            They can also be strings to denote positions in TikZ style, such as (x, y)
-            or (angle:radius).
-            If a dict, it should be keyed by node to a position.
-            If an empty dict, a circular layout is computed by TikZ.
-            If you are drawing many graphs in subfigures, use a list of position dicts.
-        tikz_options : string
-            The tikzpicture options description defining the options for the picture.
-            Often large scale options like `[scale=2]`.
-        default_node_options : string
-            The draw options for a path of nodes. Individual node options override these.
-        node_options : string or dict
-            The name of the node attribute on `G` that holds the options for each node.
-            Or a dict keyed by node to a string holding the options for that node.
-        node_label : string or dict
-            The name of the node attribute on `G` that holds the node label (text)
-            displayed for each node. If the attribute is "" or not present, the node
-            itself is drawn as a string. LaTeX processing such as ``"$A_1$"`` is allowed.
-            Or a dict keyed by node to a string holding the label for that node.
-        default_edge_options : string
-            The options for the scope drawing all edges. The default is "[-]" for
-            undirected graphs and "[->]" for directed graphs.
-        edge_options : string or dict
-            The name of the edge attribute on `G` that holds the options for each edge.
-            If the edge is a self-loop and ``"loop" not in edge_options`` the option
-            "loop," is added to the options for the self-loop edge. Hence you can
-            use "[loop above]" explicitly, but the default is "[loop]".
-            Or a dict keyed by edge to a string holding the options for that edge.
-        edge_label : string or dict
-            The name of the edge attribute on `G` that holds the edge label (text)
-            displayed for each edge. If the attribute is "" or not present, no edge
-            label is drawn.
-            Or a dict keyed by edge to a string holding the label for that edge.
-        edge_label_options : string or dict
-            The name of the edge attribute on `G` that holds the label options for
-            each edge. For example, "[sloped,above,blue]". The default is no options.
-            Or a dict keyed by edge to a string holding the label options for that edge.
-        caption : string
-            The caption string for the figure environment
-        latex_label : string
-            The latex label used for the figure for easy referral from the main text
-        sub_captions : list of strings
-            The sub_caption string for each subfigure in the figure
-        sub_latex_labels : list of strings
-            The latex label for each subfigure in the figure
-        n_rows : int
-            The number of rows of subfigures to arrange for multiple graphs
-        as_document : bool
-            Whether to wrap the latex code in a document envionment for compiling
-        document_wrapper : formatted text string with variable ``content``.
-            This text is called to evaluate the content embedded in a document
-            environment with a preamble setting up the TikZ syntax.
-        figure_wrapper : formatted text string
-            This text is evaluated with variables ``content``, ``caption`` and ``label``.
-            It wraps the content and if a caption is provided, adds the latex code for
-            that caption, and if a label is provided, adds the latex code for a label.
-        subfigure_wrapper : formatted text string
-            This text evaluate variables ``size``, ``content``, ``caption`` and ``label``.
-            It wraps the content and if a caption is provided, adds the latex code for
-            that caption, and if a label is provided, adds the latex code for a label.
-            The size is the vertical size of each row of subfigures as a fraction.
+            pos : string or dict or list
+                The name of the node attribute on `G` that holds the position of each node.
+                Positions can be sequences of length 2 with numbers for (x,y) coordinates.
+                They can also be strings to denote positions in TikZ style, such as (x, y)
+                or (angle:radius).
+                If a dict, it should be keyed by node to a position.
+                If an empty dict, a circular layout is computed by TikZ.
+                If you are drawing many graphs in subfigures, use a list of position dicts.
+            tikz_options : string
+                The tikzpicture options description defining the options for the picture.
+                Often large scale options like `[scale=2]`.
+            default_node_options : string
+                The draw options for a path of nodes. Individual node options override these.
+            node_options : string or dict
+                The name of the node attribute on `G` that holds the options for each node.
+                Or a dict keyed by node to a string holding the options for that node.
+            node_label : string or dict
+                The name of the node attribute on `G` that holds the node label (text)
+                displayed for each node. If the attribute is "" or not present, the node
+                itself is drawn as a string. LaTeX processing such as ``"$A_1$"`` is allowed.
+                Or a dict keyed by node to a string holding the label for that node.
+            default_edge_options : string
+                The options for the scope drawing all edges. The default is "[-]" for
+                undirected graphs and "[->]" for directed graphs.
+            edge_options : string or dict
+                The name of the edge attribute on `G` that holds the options for each edge.
+                If the edge is a self-loop and ``"loop" not in edge_options`` the option
+                "loop," is added to the options for the self-loop edge. Hence you can
+                use "[loop above]" explicitly, but the default is "[loop]".
+                Or a dict keyed by edge to a string holding the options for that edge.
+            edge_label : string or dict
+                The name of the edge attribute on `G` that holds the edge label (text)
+                displayed for each edge. If the attribute is "" or not present, no edge
+                label is drawn.
+                Or a dict keyed by edge to a string holding the label for that edge.
+            edge_label_options : string or dict
+                The name of the edge attribute on `G` that holds the label options for
+                each edge. For example, "[sloped,above,blue]". The default is no options.
+                Or a dict keyed by edge to a string holding the label options for that edge.
+            caption : string
+                The caption string for the figure environment
+            latex_label : string
+                The latex label used for the figure for easy referral from the main text
+            sub_captions : list of strings
+                The sub_caption string for each subfigure in the figure
+            sub_latex_labels : list of strings
+                The latex label for each subfigure in the figure
+            n_rows : int
+                The number of rows of subfigures to arrange for multiple graphs
+            as_document : bool
+                Whether to wrap the latex code in a document environment for compiling
+            document_wrapper : formatted text string with variable ``content``.
+                This text is called to evaluate the content embedded in a document
+                environment with a preamble setting up the TikZ syntax.
+            figure_wrapper : formatted text string
+                This text is evaluated with variables ``content``, ``caption`` and ``label``.
+                It wraps the content and if a caption is provided, adds the latex code for
+                that caption, and if a label is provided, adds the latex code for a label.
+            subfigure_wrapper : formatted text string
+                This text evaluate variables ``size``, ``content``, ``caption`` and ``label``.
+                It wraps the content and if a caption is provided, adds the latex code for
+                that caption, and if a label is provided, adds the latex code for a label.
+                The size is the vertical size of each row of subfigures as a fraction.

    See Also
    ========
@@ -289,7 +289,7 @@ def draw_networkx(G, pos=None, arrows=None, with_labels=True, **kwds):
        "with_labels",
    }

-    if any([k not in valid_kwds for k in kwds]):
+    if any(k not in valid_kwds for k in kwds):
        invalid_args = ", ".join([k for k in kwds if k not in valid_kwds])
        raise ValueError(f"Received invalid argument(s): {invalid_args}")

@@ -1184,7 +1184,7 @@ def draw_networkx_edge_labels(
            trans_angle = 0.0
        # use default box of white with white border
        if bbox is None:
-            bbox = dict(boxstyle="round", ec=(1.0, 1.0, 1.0), fc=(1.0, 1.0, 1.0))
+            bbox = {"boxstyle": "round", "ec": (1.0, 1.0, 1.0), "fc": (1.0, 1.0, 1.0)}
        if not isinstance(label, str):
            label = str(label)  # this makes "1" and 1 labeled the same

@@ -357,7 +357,6 @@ class TestLayout:
        self.check_kamada_kawai_costfn(pos, invdist, meanwt, 3)

    def test_spiral_layout(self):
-
        G = self.Gs

        # a lower value of resolution should result in a more compact layout
@@ -197,7 +197,7 @@ def test_more_edge_colors_than_num_edges_directed():
        assert mpl.colors.same_color(fap.get_edgecolor(), expected)


-def test_edge_color_string_with_gloabl_alpha_undirected():
+def test_edge_color_string_with_global_alpha_undirected():
    edge_collection = nx.draw_networkx_edges(
        barbell,
        pos=nx.random_layout(barbell),