update

.CondaPkg/env/Lib/site-packages/skimage/graph/tests/test_connect.py

@@ -0,0 +1,72 @@
+import numpy as np
+import skimage.graph.mcp as mcp
+
+# import stentseg.graph._mcp as mcp
+
+from skimage._shared.testing import assert_array_equal
+
+
+a = np.ones((8, 8), dtype=np.float32)
+count = 0
+
+
+class MCP(mcp.MCP_Connect):
+    def _reset(self):
+        """Reset the id map."""
+        mcp.MCP_Connect._reset(self)
+        self._conn = {}
+        self._bestconn = {}
+
+    def create_connection(self, id1, id2, pos1, pos2, cost1, cost2):
+        # Process data
+        hash = min(id1, id2), max(id1, id2)
+        val = min(pos1, pos2), max(pos1, pos2)
+        cost = min(cost1, cost2)
+        # Add to total list
+        self._conn.setdefault(hash, []).append(val)
+        # Keep track of connection with lowest cost
+        curcost = self._bestconn.get(hash, (np.inf,))[0]
+        if cost < curcost:
+            self._bestconn[hash] = (cost,) + val
+
+
+def test_connections():
+    # Create MCP object with three seed points
+    mcp = MCP(a)
+    costs, traceback = mcp.find_costs([(1, 1), (7, 7), (1, 7)])
+
+    # Test that all three seed points are connected
+    connections = set(mcp._conn.keys())
+    assert (0, 1) in connections
+    assert (1, 2) in connections
+    assert (0, 2) in connections
+
+    # Test that any two neighbors have only been connected once
+    for position_tuples in mcp._conn.values():
+        n1 = len(position_tuples)
+        n2 = len(set(position_tuples))
+        assert n1 == n2
+
+    # For seed 0 and 1
+    cost, pos1, pos2 = mcp._bestconn[(0, 1)]
+    # Test meeting points
+    assert (pos1, pos2) == ((3, 3), (4, 4))
+    # Test the whole path
+    path = mcp.traceback(pos1) + list(reversed(mcp.traceback(pos2)))
+    assert_array_equal(path, [(1, 1), (2, 2), (3, 3), (4, 4), (5, 5), (6, 6), (7, 7)])
+
+    # For seed 1 and 2
+    cost, pos1, pos2 = mcp._bestconn[(1, 2)]
+    # Test meeting points
+    assert (pos1, pos2) == ((3, 7), (4, 7))
+    # Test the whole path
+    path = mcp.traceback(pos1) + list(reversed(mcp.traceback(pos2)))
+    assert_array_equal(path, [(1, 7), (2, 7), (3, 7), (4, 7), (5, 7), (6, 7), (7, 7)])
+
+    # For seed 0 and 2
+    cost, pos1, pos2 = mcp._bestconn[(0, 2)]
+    # Test meeting points
+    assert (pos1, pos2) == ((1, 3), (1, 4))
+    # Test the whole path
+    path = mcp.traceback(pos1) + list(reversed(mcp.traceback(pos2)))
+    assert_array_equal(path, [(1, 1), (1, 2), (1, 3), (1, 4), (1, 5), (1, 6), (1, 7)])